myRT

myRT report for GCA_000686805.1_ASM68680v1

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Seq: KK366017.1 Bacillus sp. UNC41MFS5 genomic scaffold BR30DRAFT_scaffold00001.1, whole genome shotgun sequence (1473536 bp)
Overview 1 RT 1: 806702-810899 bp Neighborhood of RT #1 [806702, 810961] COG4637 YbjD RVT-Retrons EVE COG3440 Feature: gene Location: 806702-808645 bp Feature: domain Description: COG4637 Location: 806720-806873 bp Feature: domain Description: COG4637 Location: 806720-806873 bp Feature: domain Description: YbjD Location: 807209-808058 bp Feature: domain Description: YbjD Location: 807209-808058 bp Feature: gene Location: 808744-808899 bp Feature: gene Location: 808902-809885 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 808977-809532 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 808977-809532 bp Feature: gene Location: 810095-810343 bp Feature: domain Description: EVE Location: 810110-810338 bp Feature: domain Description: EVE Location: 81 01 1 0-81 0338 bp Feature: gene Location: 810404-810961 bp Feature: domain Description: COG3440 Location: 810653-810899 bp Feature: domain Description: COG3440 Location: 81 0653-81 0899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), YbjD (COG3593), RVT-Retrons, EVE (pfam01878), COG3440 (Predicted restriction endonuclease )

Seq: JMLP01000010.1 Bacillus sp. UNC41MFS5 BR30DRAFT_scaffold00006.6_C, whole genome shotgun sequence (396444 bp)
Overview 1 RT 1: 394197-396254 bp Neighborhood of RT #1 [394197, 396442] GDPD_TtGDE_like YycC RVT-GII GIIM Feature: gene Location: 394197-394985 bp Feature: domain Description: GDPD_TtGDE_like Location: 394263-394941 bp Feature: domain Description: GDPD_TtGDE_like Location: 3942 63-394941 bp Feature: gene Location: 394964-395101 bp Feature: domain Description: YycC Location: 394967-395096 bp Feature: domain Description: YycC Location: 394967-395096 bp Feature: gene Location: 395216-396442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395369-395984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395369-395984 bp Feature: domain Description: GIIM Note: maturase Location: 396044-396254 bp Feature: domain Description: GIIM Note: maturase Location: 396044-3962 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDPD_TtGDE_like (cd08563), YycC (pfam14174), RVT-GII, GIIM (pfam08388)

Seq: JMLP01000016.1 Bacillus sp. UNC41MFS5 BR30DRAFT_scaffold00011.11_C, whole genome shotgun sequence (180081 bp)
Overview 1 RT 1: 2-3953 bp Neighborhood of RT #1 [2, 3988] GIIM RVT-GII Rieske_RO_Alpha_BPDO_like RHO_alpha_C_NDO-like Feature: gene Location: 2-229 bp Feature: domain Description: GIIM Note: maturase Location: 5-134 bp Feature: domain Description: GIIM Note: maturase Location: 5-13 4 bp Feature: gene Location: 415-1572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 709-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 709-13 3 9 bp Feature: gene Location: 2280-2444 bp Feature: gene Location: 2663-3988 bp Feature: domain Description: Rieske_RO_Alpha_BPDO_like Location: 2780-3158 bp Feature: domain Description: Rieske_RO_Alpha_BPDO_like Location: 2780-3 158 bp Feature: domain Description: RHO_alpha_C_NDO-like Location: 3221-3953 bp Feature: domain Description: RHO_alpha_C_NDO-like Location: 3 221-3 953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rieske_RO_Alpha_BPDO_like (cd03472), RHO_alpha_C_NDO-like (cd08881), RVT-GII

Seq: JMLP01000019.1 Bacillus sp. UNC41MFS5 BR30DRAFT_scaffold00014.14_C, whole genome shotgun sequence (104023 bp)
Overview 1 RT 1: 102137-103927 bp Neighborhood of RT #1 [102137, 104022] CspC TPR RVT-GII GIIM Feature: gene Location: 102137-102403 bp Feature: domain Description: CspC Location: 102206-102398 bp Feature: domain Description: CspC Location: 102206-102398 bp Feature: gene Location: 102591-102896 bp Feature: domain Description: TPR Location: 102642-102732 bp Feature: domain Description: TPR Location: 10264 2-102732 bp Feature: gene Location: 102917-103624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103226-103574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103226-103574 bp Feature: gene Location: 103795-104022 bp Feature: domain Description: GIIM Note: maturase Location: 103798-103927 bp Feature: domain Description: GIIM Note: maturase Location: 103798-103927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), TPR (smart00028), RVT-GII, GIIM (pfam08388)

Seq: JMLP01000035.1 Bacillus sp. UNC41MFS5 BR30DRAFT_scaffold00029.29_C, whole genome shotgun sequence (25129 bp)
Overview 1 RT 1: 3-2351 bp Neighborhood of RT #1 [3, 2383] RVT-GII GIIM AcrR EmrE Feature: gene Location: 3-1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156-771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 6-771 bp Feature: domain Description: GIIM Note: maturase Location: 831-1041 bp Feature: domain Description: GIIM Note: maturase Location: 831-1041 bp Feature: gene Location: 1437-2018 bp Feature: domain Description: AcrR Location: 1452-1947 bp Feature: domain Description: AcrR Location: 145 2-1947 bp Feature: gene Location: 2042-2383 bp Feature: domain Description: EmrE Location: 2054-2351 bp Feature: domain Description: EmrE Location: 205 4-235 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), EmrE (pfam13536), RVT-GII, GIIM (pfam08388)

Seq: JMLP01000038.1 Bacillus sp. UNC41MFS5 BR30DRAFT_scaffold00032.32_C, whole genome shotgun sequence (18303 bp)
Overview 1 RT 1: 16180-17922 bp Neighborhood of RT #1 [16180, 18302] PLDc_N PRK06474 RVT-GII Feature: gene Location: 16180-16428 bp Feature: domain Description: PLDc_N Location: 16282-16408 bp Feature: domain Description: PLDc_N Location: 16 282-16 408 bp Feature: gene Location: 16528-17091 bp Feature: domain Description: PRK06474 Location: 16549-17086 bp Feature: domain Description: PRK06 474 Location: 16 549-17086 bp Feature: gene Location: 17433-18302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17436-17922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17436 -17922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N (pfam13396), PRK06474 (hypothetical protein; Provisional), RVT-GII

Seq: JMLP01000046.1 Bacillus sp. UNC41MFS5 BR30DRAFT_scaffold00040.40_C, whole genome shotgun sequence (4010 bp)
Overview 1 RT 1: 2-2957 bp Neighborhood of RT #1 [2, 3025] RVT-GII YolD TrxB Feature: gene Location: 2-553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257 -551 bp Feature: gene Location: 1460-1831 bp Feature: domain Description: YolD Location: 1544-1814 bp Feature: domain Description: YolD Location: 1544-1814 bp Feature: gene Location: 2045-3025 bp Feature: domain Description: TrxB Location: 2063-2957 bp Feature: domain Description: TrxB Location: 2063-2957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YolD (pfam08863), TrxB (COG0492), RVT-GII

Seq: JMLP01000047.1 Bacillus sp. UNC41MFS5 BR30DRAFT_scaffold00041.41_C, whole genome shotgun sequence (2735 bp)
Overview 1 RT 1: 86-2371 bp Neighborhood of RT #1 [86, 2442] RVT-GII Acetyltransf_10 Feature: gene Location: 86-547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341-533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341-533 bp Feature: gene Location: 761-913 bp Feature: gene Location: 1915-2442 bp Feature: domain Description: Acetyltransf_10 Location: 2083-2371 bp Feature: domain Description: Acetyltransf_10 Location: 208 3-2371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RVT-GII

Seq: JMLP01000054.1 Bacillus sp. UNC41MFS5 BR30DRAFT_scaffold00048.48_C, whole genome shotgun sequence (1615 bp)
Overview 1 RT 1: 27-1430 bp Neighborhood of RT #1 [27, 1525] RVT-GII GIIM Feature: gene Location: 27-239 bp Feature: gene Location: 266-1525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 7-1121 bp Feature: domain Description: GIIM Note: maturase Location: 1217-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1217-1430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)