myRT

myRT report for GCA_000687515.1_ASM68751v1

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Seq: JHWB01000009.1 Lachnobacterium bovis strain AE2004 CC91DRAFT_scf7180000000094_quiver.9_C, whole genome shotgun sequence (903504 bp)
Overview 1 RT 1: 309952-314783 bp Neighborhood of RT #1 [309952, 314783] Mob_Pre Mob_Pre Smc Smc SLATT_5 RVT-UG17 Feature: gene Location: 309952-311577 bp Feature: domain Description: Mob_Pre Location: 309991-310078 bp Feature: domain Description: Mob_Pre Location: 309991 -31 0078 bp Feature: domain Description: Mob_Pre Location: 310078-310414 bp Feature: domain Description: Mob_Pre Location: 31 0078-31 041 4 bp Feature: domain Description: Smc Location: 310585-311161 bp Feature: domain Description: Smc Location: 31 0585-31 1 1 61 bp Feature: domain Description: Smc Location: 311284-311515 bp Feature: domain Description: Smc Location: 31 1 284-31 1 51 5 bp Feature: gene Location: 311769-312329 bp Feature: domain Description: SLATT_5 Location: 311778-312315 bp Feature: domain Description: SLATT_5 Location: 31 1 778-31 231 5 bp Feature: gene Location: 312330-313640 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 312558-313143 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 31 2558-31 31 43 bp Feature: gene Location: 314007-314564 bp Feature: gene Location: 314640-314783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), Smc (COG1196), SLATT_5 (pfam18160), RVT-UG17

Seq: JHWB01000013.1 Lachnobacterium bovis strain AE2004 CC91DRAFT_scf7180000000100_quiver.13_C, whole genome shotgun sequence (683771 bp)
Overview 1 RT 1: 388006-396125 bp Neighborhood of RT #1 [388006, 396130] DUF262 DUF1524 Lon_rel_chp RVT-AbiA HEPN_AbiA_CTD Tra8 Tra8 YozG Feature: gene Location: 388006-389745 bp Feature: domain Description: DUF262 Location: 388039-388747 bp Feature: domain Description: DUF2 62 Location: 388039-388747 bp Feature: domain Description: DUF1524 Location: 389347-389716 bp Feature: domain Description: DUF152 4 Location: 389347-389716 bp Feature: gene Location: 389763-391940 bp Feature: domain Description: Lon_rel_chp Location: 389859-391935 bp Feature: domain Description: Lon_rel_chp Location: 389859-391935 bp Feature: gene Location: 391940-393883 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 392288-392816 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 392 2 88-392 816 bp Feature: domain Description: HEPN_AbiA_CTD Location: 393425-393818 bp Feature: domain Description: HEPN_AbiA_CTD Location: 39342 5-393818 bp Feature: gene Location: 394128-395465 bp Feature: domain Description: Tra8 Location: 394149-394356 bp Feature: domain Description: Tra8 Location: 394149-394356 bp Feature: domain Description: Tra8 Location: 394515-395370 bp Feature: domain Description: Tra8 Location: 394515-395370 bp Feature: gene Location: 395915-396130 bp Feature: domain Description: YozG Location: 395927-396125 bp Feature: domain Description: YozG Location: 39592 7-39612 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), DUF1524 (pfam07510), Lon_rel_chp (TIGR02653), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), Tra8 (COG2826), YozG (COG3655)

Seq: JHWB01000019.1 Lachnobacterium bovis strain AE2004 CC91DRAFT_scf7180000000087_quiver_dupTrim_6184.19_C, whole genome shotgun sequence (274285 bp)
Overview 1 RT 1: 18851-22415 bp Neighborhood of RT #1 [18851, 22415] AbiF rve_3 RVT-GII GIIM DUF1266 Feature: gene Location: 18851-19951 bp Feature: domain Description: AbiF Location: 19070-19931 bp Feature: domain Description: AbiF Location: 19070-1993 1 bp Feature: gene Location: 19954-20160 bp Feature: domain Description: rve_3 Location: 20008-20140 bp Feature: domain Description: rve_3 Location: 20008-20140 bp Feature: gene Location: 20287-21456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20389-21010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 89-21010 bp Feature: domain Description: GIIM Note: maturase Location: 21067-21292 bp Feature: domain Description: GIIM Note: maturase Location: 21067-21292 bp Feature: gene Location: 21916-22218 bp Feature: domain Description: DUF1266 Location: 21922-22123 bp Feature: domain Description: DUF1266 Location: 21922-22123 bp Feature: gene Location: 22224-22415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiF (COG4823), rve_3 (pfam13683), RVT-GII, GIIM (pfam08388), DUF1266 (pfam06889)