myRT

myRT report for GCA_000687655.1_ASM68765v1

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Seq: JHWR01000007.1 Lachnospiraceae bacterium YSB2008 T533DRAFT_scaffold00007.7_C, whole genome shotgun sequence (153392 bp)
Overview 1 RT 1: 5118-13974 bp Neighborhood of RT #1 [5118, 14081] YfhO PRK11107 PRK11107 RVT-GII GIIM TadZ-like CpaF Feature: gene Location: 5118-7799 bp Feature: domain Description: YfhO Location: 5178-7656 bp Feature: domain Description: YfhO Location: 51 78-7656 bp Feature: gene Location: 7910-9667 bp Feature: domain Description: PRK11107 Location: 8477-9233 bp Feature: domain Description: PRK1 1 1 07 Location: 8477-9233 bp Feature: domain Description: PRK11107 Location: 9272-9659 bp Feature: domain Description: PRK1 1 1 07 Location: 9272-9659 bp Feature: gene Location: 10133-11551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10484-11105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0484-1 1 1 05 bp Feature: domain Description: GIIM Note: maturase Location: 11156-11387 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 56-1 1 387 bp Feature: gene Location: 11968-12846 bp Feature: domain Description: TadZ-like Location: 12346-12787 bp Feature: domain Description: TadZ-like Location: 1 2346-1 2787 bp Feature: gene Location: 12843-14081 bp Feature: domain Description: CpaF Location: 12987-13974 bp Feature: domain Description: CpaF Location: 1 2987-1 3974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfhO (pfam09586), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), RVT-GII, GIIM (pfam08388), TadZ-like (cd17869), CpaF (COG4962)

Seq: JHWR01000008.1 Lachnospiraceae bacterium YSB2008 T533DRAFT_scaffold00008.8_C, whole genome shotgun sequence (133879 bp)
Overview 1 RT 1: 54704-60679 bp Neighborhood of RT #1 [54704, 60681] SH3_3 SH3_3 CwlJ RVT-GII GIIM argC ArgJ Feature: gene Location: 54704-56131 bp Feature: domain Description: SH3_3 Location: 55127-55280 bp Feature: domain Description: SH3_3 Location: 5512 7-552 80 bp Feature: domain Description: SH3_3 Location: 55334-55490 bp Feature: domain Description: SH3_3 Location: 55334-55490 bp Feature: domain Description: CwlJ Location: 55559-56129 bp Feature: domain Description: CwlJ Location: 55559-5612 9 bp Feature: gene Location: 56545-56688 bp Feature: gene Location: 56675-57958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56885-57500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56885-57500 bp Feature: domain Description: GIIM Note: maturase Location: 57560-57785 bp Feature: domain Description: GIIM Note: maturase Location: 57560-57785 bp Feature: gene Location: 58260-59393 bp Feature: domain Description: argC Location: 58263-59391 bp Feature: domain Description: argC Location: 582 63-59391 bp Feature: gene Location: 59452-60681 bp Feature: domain Description: ArgJ Location: 59464-60679 bp Feature: domain Description: ArgJ Location: 59464-60679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_3 (pfam08239), CwlJ (COG3773), RVT-GII, GIIM (pfam08388), argC (TIGR01850), ArgJ (TIGR00120)

Seq: JHWR01000011.1 Lachnospiraceae bacterium YSB2008 T533DRAFT_scaffold00011.11_C, whole genome shotgun sequence (109107 bp)
Overview 1 RT 1: 12253-18500 bp Neighborhood of RT #1 [12253, 18694] GGDEF UgpB RVT-GII GIIM GGGtGRT IscU Feature: gene Location: 12253-13734 bp Feature: domain Description: GGDEF Location: 13237-13717 bp Feature: domain Description: GGDEF Location: 13 23 7-13 717 bp Feature: gene Location: 13745-15013 bp Feature: domain Description: UgpB Location: 13751-14987 bp Feature: domain Description: UgpB Location: 13 751-14987 bp Feature: gene Location: 15124-16500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15421-16036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15421-1603 6 bp Feature: domain Description: GIIM Note: maturase Location: 16096-16309 bp Feature: domain Description: GIIM Note: maturase Location: 16096-163 09 bp Feature: gene Location: 16964-17983 bp Feature: domain Description: GGGtGRT Location: 16976-17963 bp Feature: domain Description: GGGtGRT Location: 16976-17963 bp Feature: gene Location: 18002-18694 bp Feature: domain Description: IscU Location: 18095-18500 bp Feature: domain Description: IscU Location: 18095-18500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GGDEF (TIGR00254), UgpB (COG1653), RVT-GII, GIIM (pfam08388), GGGtGRT (pfam14057), IscU (COG0822)

Seq: JHWR01000012.1 Lachnospiraceae bacterium YSB2008 T533DRAFT_scaffold00012.12_C, whole genome shotgun sequence (99516 bp)
Overview 1 RT 1: 19828-23978 bp Neighborhood of RT #1 [19828, 23978] RVT-GII GIIM DUF3801 Feature: gene Location: 19828-20007 bp Feature: gene Location: 20163-20387 bp Feature: gene Location: 20851-22242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21163-21778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21163-21778 bp Feature: domain Description: GIIM Note: maturase Location: 21838-22069 bp Feature: domain Description: GIIM Note: maturase Location: 21838-22069 bp Feature: gene Location: 22331-23113 bp Feature: domain Description: DUF3801 Location: 22436-23009 bp Feature: domain Description: DUF3801 Location: 224 36-23009 bp Feature: gene Location: 23106-23978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3801 (pfam12687)

Seq: JHWR01000013.1 Lachnospiraceae bacterium YSB2008 T533DRAFT_scaffold00013.13_C, whole genome shotgun sequence (96194 bp)
Overview 1 RT 1: 15992-20540 bp Neighborhood of RT #1 [15992, 20557] YciA RVT-UG26 LPLAT_AGPAT-like RPC10 RacX Feature: gene Location: 15992-16507 bp Feature: domain Description: YciA Location: 16049-16496 bp Feature: domain Description: YciA Location: 16049-16496 bp Feature: gene Location: 16529-16921 bp Feature: gene Location: 17174-18445 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 17423-18032 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 17423-18032 bp Feature: gene Location: 18467-19747 bp Feature: domain Description: LPLAT_AGPAT-like Location: 18593-19109 bp Feature: domain Description: LPLAT_AGPAT-like Location: 185 93-19109 bp Feature: domain Description: RPC10 Location: 19205-19280 bp Feature: domain Description: RPC10 Location: 19205 -19280 bp Feature: gene Location: 19853-20557 bp Feature: domain Description: RacX Location: 19868-20540 bp Feature: domain Description: RacX Location: 19868-205 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YciA (COG1607), RVT-UG26, LPLAT_AGPAT-like (cd07989), RPC10 (COG1996), RacX (COG1794)