myRT

myRT report for GCA_000689275.1_AFX_PRJEB4159_v1

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Seq: HG970966.1 (192702 bp)
Overview 1 RT 1: 66812-71248 bp 2 RT 2: 165712-168896 bp Neighborhood of RT #1 [66812, 71256] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Neighborhood of RT #2 [165712, 168896] PRK10276 RVT-GII Feature: gene Location: 66812-67315 bp Feature: domain Description: DDE_Tnp_IS1 Location: 66923-67313 bp Feature: domain Description: DDE_Tnp_IS1 Location: 66923-6731 3 bp Feature: gene Location: 67234-67509 bp Feature: domain Description: InsA Location: 67237-67501 bp Feature: domain Description: InsA Location: 67237-67501 bp Feature: gene Location: 67661-69148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68066-68756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68066-68756 bp Feature: gene Location: 69173-69985 bp Feature: domain Description: PRK10276 Location: 69605-69968 bp Feature: domain Description: PRK1 0276 Location: 69605-69968 bp Feature: gene Location: 69985-71256 bp Feature: domain Description: umuC Location: 69988-71248 bp Feature: domain Description: umuC Location: 69988-71 248 bp Feature: gene Location: 165712-166137 bp Feature: domain Description: PRK10276 Location: 165715-166123 bp Feature: domain Description: PRK1 0276 Location: 1 6571 5-1 661 23 bp Feature: gene Location: 166255-166488 bp Feature: gene Location: 166539-168050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166944-167658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 66944-1 67658 bp Feature: gene Location: 168284-168514 bp Feature: gene Location: 168573-168896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: HG970968.1 (748923 bp)
Overview 1 RT 1: 477455-484308 bp Neighborhood of RT #1 [477455, 484325] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 477455-478120 bp Feature: domain Description: INT_P4_C Location: 477560-478118 bp Feature: domain Description: INT_P4_C Location: 477560-478118 bp Feature: gene Location: 478381-478821 bp Feature: domain Description: Integrase_1 Location: 478387-478603 bp Feature: domain Description: Integrase_1 Location: 478387-478603 bp Feature: gene Location: 478878-480956 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 479286-479730 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4792 86-479730 bp Feature: gene Location: 480956-483565 bp Feature: domain Description: FimD Location: 481013-483554 bp Feature: domain Description: FimD Location: 481013-483554 bp Feature: gene Location: 483597-484325 bp Feature: domain Description: FimC Location: 483645-484308 bp Feature: domain Description: FimC Location: 483645-484308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)