myRT

myRT report for GCA_000689375.1_CHV_1

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Seq: CBQZ010000001.1 Cardinium endosymbiont cBtQ1 of Bemisia tabaci WGS project CBQZ00000000, contig CHV_a, whole genome shotgun sequence (611945 bp)
Overview 1 RT 1: 211090-216717 bp 2 RT 2: 291690-299070 bp 3 RT 3: 434254-439982 bp 4 RT 4: 595938-598009 bp Neighborhood of RT #1 [211090, 216788] PAP2_like_4 ArnT RVT-GII DUF772 COG5421 Neighborhood of RT #2 [291690, 299078] IS285 DUF772 RVT-GII GIIM DUF772 asnC Neighborhood of RT #3 [434254, 440002] IS285 DDE_Tnp_1_3 RVT-GII GIIM DUF4292 DUF4292 RNA_pol_Rpb6 Neighborhood of RT #4 [595938, 598918] RVT-GII GIIM DDE_Tnp_1_3 DUF772 Feature: gene Location: 211090-211797 bp Feature: domain Description: PAP2_like_4 Location: 211195-211705 bp Feature: domain Description: PAP2_like_4 Location: 21 1 1 95-21 1 705 bp Feature: gene Location: 211721-213385 bp Feature: domain Description: ArnT Location: 211835-212762 bp Feature: domain Description: ArnT Location: 21 1 835-21 2762 bp Feature: gene Location: 213951-214526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214155-214524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 41 55-21 4524 bp Feature: gene Location: 214654-215019 bp Feature: domain Description: DUF772 Location: 214813-215008 bp Feature: domain Description: DUF772 Location: 21 481 3-21 5008 bp Feature: gene Location: 215118-216788 bp Feature: domain Description: COG5421 Location: 215157-216717 bp Feature: domain Description: COG5421 Location: 21 51 57-21 671 7 bp Feature: gene Location: 291690-292082 bp Feature: domain Description: IS285 Location: 291699-292077 bp Feature: domain Description: IS285 Location: 291 699-292077 bp Feature: gene Location: 292239-293571 bp Feature: domain Description: DUF772 Location: 292398-292614 bp Feature: domain Description: DUF772 Location: 292398-29261 4 bp Feature: gene Location: 293813-295123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294134-294758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2941 34-294758 bp Feature: domain Description: GIIM Note: maturase Location: 294836-295046 bp Feature: domain Description: GIIM Note: maturase Location: 294836-295046 bp Feature: gene Location: 295922-297231 bp Feature: domain Description: DUF772 Location: 296081-296297 bp Feature: domain Description: DUF772 Location: 296081 -296297 bp Feature: gene Location: 297660-299078 bp Feature: domain Description: asnC Location: 297672-299070 bp Feature: domain Description: asnC Location: 297672-299070 bp Feature: gene Location: 434254-434460 bp Feature: domain Description: IS285 Location: 434296-434461 bp Feature: domain Description: IS285 Location: 434296-434461 bp Feature: gene Location: 434437-435312 bp Feature: domain Description: DDE_Tnp_1_3 Location: 434761-435214 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 434761 -43521 4 bp Feature: gene Location: 435813-437123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436134-436758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4361 34-436758 bp Feature: domain Description: GIIM Note: maturase Location: 436836-437046 bp Feature: domain Description: GIIM Note: maturase Location: 436836-437046 bp Feature: gene Location: 438841-439632 bp Feature: domain Description: DUF4292 Location: 439072-439270 bp Feature: domain Description: DUF4292 Location: 439072-439270 bp Feature: domain Description: DUF4292 Location: 439318-439564 bp Feature: domain Description: DUF4292 Location: 43931 8-439564 bp Feature: gene Location: 439697-440002 bp Feature: domain Description: RNA_pol_Rpb6 Location: 439745-439982 bp Feature: domain Description: RNA_pol_Rpb6 Location: 439745-439982 bp Feature: gene Location: 595938-596249 bp Feature: gene Location: 593930-594937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593948-594572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593948-594572 bp Feature: domain Description: GIIM Note: maturase Location: 594650-594860 bp Feature: domain Description: GIIM Note: maturase Location: 594650-594860 bp Feature: gene Location: 595066-595941 bp Feature: domain Description: DDE_Tnp_1_3 Location: 595390-595843 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 595390-595843 bp Feature: gene Location: 597634-598918 bp Feature: domain Description: DUF772 Location: 597793-598009 bp Feature: domain Description: DUF772 Location: 597793-598009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_like_4 (cd03395), ArnT (COG1807), RVT-GII, DUF772 (pfam05598), COG5421 (Transposase ), IS285 (COG3328), GIIM (pfam08388), asnC (PRK03932), DDE_Tnp_1_3 (pfam13612), DUF4292 (pfam14125)
RNA_pol_Rpb6 (pfam01192)