myRT

myRT report for GCA_000689435.1_Contig

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Seq: CBTQ010000115.1 (89394 bp)
Overview 1 RT 1: 63110-68794 bp Neighborhood of RT #1 [63110, 68799] SdhE RVT_N RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 63110-63562 bp Feature: gene Location: 63546-63800 bp Ori: CDH72722.1 Feature: domain Description: SdhE Location: 63552-63792 bp Feature: domain Description: SdhE Location: 63552-63792 bp Feature: gene Location: 63876-65597 bp Ori: CDH72723.1 Feature: domain Description: RVT_N Location: 63933-64170 bp Feature: domain Description: RVT_N Location: 63933-641 70 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64221-64857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64221 -64857 bp Feature: domain Description: YkfC Location: 65055-65211 bp Feature: domain Description: YkfC Location: 65055-6521 1 bp Feature: domain Description: HNH Note: nucleases Location: 65394-65532 bp Feature: domain Description: HNH Note: nucleases Location: 65394-65532 bp Feature: gene Location: 66918-67862 bp Ori: CDH72724.1 Feature: domain Description: YgfZ Location: 66927-67827 bp Feature: domain Description: YgfZ Location: 66927-67827 bp Feature: gene Location: 67963-68799 bp Ori: CDH72725.1 Feature: domain Description: HDOD Location: 67966-68794 bp Feature: domain Description: HDOD Location: 67966-68794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CBTQ010000056.1 (35868 bp)
Overview 1 RT 1: 1748-9059 bp Neighborhood of RT #1 [1748, 10114] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1748-2887 bp Ori: CDH70651.1 Feature: domain Description: AAA_21 Location: 1820-1889 bp Feature: domain Description: AAA_2 1 Location: 182 0-1889 bp Feature: domain Description: AAA_21 Location: 2363-2693 bp Feature: domain Description: AAA_2 1 Location: 2 363-2 693 bp Feature: gene Location: 2887-3444 bp Feature: gene Location: 3441-6461 bp Ori: CDH70653.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3936-4407 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3936-4407 bp Feature: gene Location: 6719-8239 bp Ori: CDH70654.1 Feature: domain Description: YeeA Location: 7325-8105 bp Feature: domain Description: YeeA Location: 732 5-8105 bp Feature: gene Location: 8243-10114 bp Ori: CDH70655.1 Feature: domain Description: DUF262 Location: 8291-9059 bp Feature: domain Description: DUF2 62 Location: 82 91-9059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CBTQ010000035.1 (61672 bp)
Overview 1 RT 1: 64-5334 bp Neighborhood of RT #1 [64, 5531] RVT-GII GIIM CHD CHD Feature: gene Location: 64-231 bp Feature: gene Location: 733-1992 bp Ori: CDH69337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937-1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 7-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1672-1894 bp Feature: domain Description: GIIM Note: maturase Location: 1672-1894 bp Feature: gene Location: 2142-2540 bp Feature: gene Location: 3987-5531 bp Ori: CDH69339.1 Feature: domain Description: CHD Location: 4203-4617 bp Feature: domain Description: CHD Location: 4203 -4617 bp Feature: domain Description: CHD Location: 4845-5334 bp Feature: domain Description: CHD Location: 4845-53 3 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CBTQ010000020.1 (218153 bp)
Overview 1 RT 1: 77148-87453 bp 2 RT 2: 103712-112532 bp Neighborhood of RT #1 [77148, 87455] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [103712, 112561] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 77148-78269 bp Ori: CDH68906.1 Feature: domain Description: COG3177 Location: 77166-78258 bp Feature: domain Description: COG3177 Location: 77166-78258 bp Feature: gene Location: 78528-78689 bp Feature: gene Location: 78992-80677 bp Ori: CDH68908.1 Feature: domain Description: RVT_N Location: 79049-79289 bp Feature: domain Description: RVT_N Location: 7904 9-79289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79337-79973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79337-79973 bp Feature: domain Description: GIIM Note: maturase Location: 80027-80258 bp Feature: domain Description: GIIM Note: maturase Location: 80027-80258 bp Feature: domain Description: HNH Note: nucleases Location: 80510-80648 bp Feature: domain Description: HNH Note: nucleases Location: 80510-8064 8 bp Feature: gene Location: 81758-85495 bp Ori: CDH68909.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 81866-82523 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 81866-82523 bp Feature: domain Description: PRK09776 Location: 82736-83207 bp Feature: domain Description: PRK09776 Location: 82736-83207 bp Feature: domain Description: PAS Location: 83264-83789 bp Feature: domain Description: PAS Location: 83264 -83789 bp Feature: domain Description: PRK10060 Location: 83801-85445 bp Feature: domain Description: PRK10060 Location: 83801-854 4 5 bp Feature: gene Location: 85602-87455 bp Ori: CDH68910.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 85614-87453 bp Feature: domain Description: PRK05658 Location: 85614 -874 53 bp Feature: gene Location: 103712-105004 bp Ori: CDH68928.1 Gene: surA Feature: domain Description: PRK10770 Location: 103802-104996 bp Feature: domain Description: PRK10770 Location: 103802-104 996 bp Feature: gene Location: 104985-107756 bp Ori: CDH68929.1 Gene: lptD Feature: domain Description: LptD Location: 105180-107742 bp Feature: domain Description: LptD Location: 105180-10774 2 bp Feature: gene Location: 107889-109601 bp Ori: CDH68930.1 Feature: domain Description: RVT_N Location: 107946-108189 bp Feature: domain Description: RVT_N Location: 10794 6-108189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108234-108870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108234 -108870 bp Feature: domain Description: YkfC Location: 109080-109230 bp Feature: domain Description: YkfC Location: 109080-109230 bp Feature: domain Description: HNH Note: nucleases Location: 109407-109545 bp Feature: domain Description: HNH Note: nucleases Location: 1094 07-10954 5 bp Feature: gene Location: 110874-111890 bp Ori: CDH68931.1 Feature: domain Description: COG3178 Location: 110877-111876 bp Feature: domain Description: COG3178 Location: 110877-111876 bp Feature: gene Location: 111887-112561 bp Ori: CDH68932.1 Feature: domain Description: NTP_transferase_like_1 Location: 111893-112532 bp Feature: domain Description: NTP_transferase_like_1 Location: 111893-112532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)