myRT

myRT report for GCA_000690115.2_gbb18v01

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Seq: JGXC01000006.1 Bordetella bronchiseptica F4563 ctg7180000008930, whole genome shotgun sequence (61667 bp)
Overview 1 RT 1: 13095-21481 bp Neighborhood of RT #1 [13095, 21525] Phage_int_SAM_2 Integrase_1 RVT-UG5 RMtype1_S_EcoKI-TRD2-CR2_like RMtype1_S_EcoKI-TRD2-CR2_like YhcG YhcG_C Feature: gene Location: 13095-13349 bp Feature: gene Location: 14189-14968 bp Ori: KDC33373.1 Feature: domain Description: Phage_int_SAM_2 Location: 14192-14453 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 41 92-1 4453 bp Feature: domain Description: Integrase_1 Location: 14501-14885 bp Feature: domain Description: Integrase_1 Location: 1 4501 -1 4885 bp Feature: gene Location: 15085-18123 bp Ori: KDC33359.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 15580-16060 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 5580-1 6060 bp Feature: gene Location: 18213-20492 bp Ori: KDC33350.1 Feature: domain Description: RMtype1_S_EcoKI-TRD2-CR2_like Location: 18486-19023 bp Feature: domain Description: RMtype1 _S_EcoKI-TRD2-CR2_like Location: 1 8486-1 9023 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2-CR2_like Location: 19233-19809 bp Feature: domain Description: RMtype1 _S_EcoKI-TRD2-CR2_like Location: 1 9233-1 9809 bp Feature: gene Location: 20485-21525 bp Ori: KDC33364.1 Feature: domain Description: YhcG Location: 20554-20872 bp Feature: domain Description: YhcG Location: 20554-20872 bp Feature: domain Description: YhcG_C Location: 21022-21481 bp Feature: domain Description: YhcG_C Location: 21 022-21 481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), RVT-UG5, RMtype1_S_EcoKI-TRD2-CR2_like (cd17261), YhcG (COG4804), YhcG_C

Seq: JGXC01000015.1 Bordetella bronchiseptica F4563 ctg7180000008923, whole genome shotgun sequence (91158 bp)
Overview 1 RT 1: 33570-38079 bp Neighborhood of RT #1 [33570, 39029] RadC DUF2513 RVT-Retrons Spo0J Feature: gene Location: 33570-34070 bp Ori: KDC32860.1 Feature: domain Description: RadC Location: 33612-34068 bp Feature: domain Description: RadC Location: 33612 -34068 bp Feature: gene Location: 34289-34654 bp Ori: KDC32843.1 Feature: domain Description: DUF2513 Location: 34295-34586 bp Feature: domain Description: DUF2 513 Location: 342 95-34586 bp Feature: gene Location: 34651-35499 bp Ori: KDC32855.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34657-35215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34657-352 15 bp Feature: gene Location: 35970-36209 bp Feature: gene Location: 37017-39029 bp Ori: KDC32854.1 Feature: domain Description: Spo0J Location: 37191-38079 bp Feature: domain Description: Spo0J Location: 37191-38079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RadC (pfam04002), DUF2513 (pfam10711), RVT-Retrons, Spo0J (COG1475)