myRT

myRT report for GCA_000690555.2_Pmandelii1.0

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Seq: AZQQ01000081.1 Pseudomonas mandelii PD30 scaffold29, whole genome shotgun sequence (14171 bp)
Overview 1 RT 1: 433-3185 bp Neighborhood of RT #1 [433, 3193] RVT-UG4 KatG OmpR Feature: gene Location: 433-1818 bp Feature: gene Location: 1938-2126 bp Ori: KDD67843.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1941-2106 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 941 -21 06 bp Feature: gene Location: 2230-2334 bp Ori: KDD67844.1 Feature: domain Description: KatG Location: 2233-2329 bp Feature: domain Description: KatG Location: 2233-2329 bp Feature: gene Location: 2510-3193 bp Ori: KDD67845.1 Feature: domain Description: OmpR Location: 2519-3185 bp Feature: domain Description: OmpR Location: 251 9-31 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, KatG (COG0376), OmpR (COG0745)

Seq: AZQQ01000100.1 Pseudomonas mandelii PD30 scaffold46, whole genome shotgun sequence (120054 bp)
Overview 1 RT 1: 8660-11956 bp Neighborhood of RT #1 [8660, 12027] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 8660-9619 bp Ori: KDD66111.1 Feature: domain Description: DDE_Tnp_IS66 Location: 8663-9470 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8663-9470 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9491-9602 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9491-9602 bp Feature: gene Location: 9616-10947 bp Feature: gene Location: 11101-12027 bp Ori: KDD66113.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11347-11956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11347-11956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII