myRT

myRT report for GCA_000690905.1_Pseudomonas_sp._Ant30-3

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Seq: JMCL01000083.1 (53384 bp)
Overview 1 RT 1: 20741-24577 bp Neighborhood of RT #1 [20741, 24577] DUF772 RVT_N RVT-GII GIIM HNH Feature: gene Location: 20741-21127 bp Feature: domain Description: DUF772 Location: 20786-20972 bp Feature: domain Description: DUF772 Location: 20786-20972 bp Feature: gene Location: 21350-21541 bp Feature: gene Location: 21771-23432 bp Feature: domain Description: RVT_N Location: 21816-22059 bp Feature: domain Description: RVT_N Location: 21 81 6-22059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22104-22740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 04-22740 bp Feature: domain Description: GIIM Note: maturase Location: 22791-23025 bp Feature: domain Description: GIIM Note: maturase Location: 22791 -23025 bp Feature: domain Description: HNH Note: nucleases Location: 23277-23400 bp Feature: domain Description: HNH Note: nucleases Location: 23277-23400 bp Feature: gene Location: 23928-24056 bp Feature: gene Location: 24296-24577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JMCL01000132.1 (9337 bp)
Overview 1 RT 1: 1055-9336 bp Neighborhood of RT #1 [1055, 9335] DDE_Tnp_IS1595 AraC_binding_2 HTH_18 RVT-GII Recombinase Zn_ribbon_recom HTH_17 HTH_17 Ser_Recombinase Resolvase Recombinase Zn_ribbon_recom Resolvase RVT-GII benzo_1_2_benA Feature: gene Location: 1055-1318 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 1079-1313 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 1079-1313 bp Feature: gene Location: 1780-2775 bp Feature: domain Description: AraC_binding_2 Location: 1846-2302 bp Feature: domain Description: AraC_binding_2 Location: 1846-2 302 bp Feature: domain Description: HTH_18 Location: 2479-2725 bp Feature: domain Description: HTH_18 Location: 2 479-2 72 5 bp Feature: gene Location: 2837-3124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3008-3110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3008-3110 bp Feature: gene Location: 3186-4817 bp Feature: domain Description: Recombinase Location: 3195-3543 bp Feature: domain Description: Recombinase Location: 3195-3543 bp Feature: domain Description: Zn_ribbon_recom Location: 3600-3768 bp Feature: domain Description: Zn_ribbon_recom Location: 3600-3768 bp Feature: domain Description: HTH_17 Location: 4479-4602 bp Feature: domain Description: HTH_17 Location: 4479-4602 bp Feature: domain Description: HTH_17 Location: 4662-4776 bp Feature: domain Description: HTH_17 Location: 4662 -4776 bp Feature: gene Location: 4814-5392 bp Feature: domain Description: Ser_Recombinase Location: 4871-5243 bp Feature: domain Description: Ser_Recombinase Location: 4871-52 43 bp Feature: gene Location: 5724-7403 bp Feature: domain Description: Resolvase Location: 5727-5895 bp Feature: domain Description: Resolvase Location: 572 7-5895 bp Feature: domain Description: Recombinase Location: 5991-6348 bp Feature: domain Description: Recombinase Location: 5991-6348 bp Feature: domain Description: Zn_ribbon_recom Location: 6390-6594 bp Feature: domain Description: Zn_ribbon_recom Location: 6390-6594 bp Feature: gene Location: 7403-7690 bp Feature: domain Description: Resolvase Location: 7424-7655 bp Feature: domain Description: Resolvase Location: 742 4-7655 bp Feature: gene Location: 8081-8536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8111-8297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8111-82 97 bp Feature: gene Location: 8544-8762 bp Feature: gene Location: 8931-9335 bp Feature: domain Description: benzo_1_2_benA Location: 8955-9336 bp Feature: domain Description: benzo_1_2 _benA Location: 8955-9336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1595 (pfam12762), AraC_binding_2 (pfam14525), HTH_18 (pfam12833), RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), Ser_Recombinase (cl02788), Resolvase (smart00857), benzo_1_2_benA (TIGR03229)

Seq: JMCL01000056.1 (71583 bp)
Overview 1 RT 1: 62371-68029 bp Neighborhood of RT #1 [62371, 68029] Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom RVT-GII INT_RitB_C_like Feature: gene Location: 62371-63249 bp Feature: domain Description: Phage_int_SAM_1 Location: 62416-62668 bp Feature: domain Description: Phage_int_SAM_1 Location: 62416-62668 bp Feature: domain Description: INT_RitC_C_like Location: 62761-63229 bp Feature: domain Description: INT_RitC_C_like Location: 62761-63 229 bp Feature: gene Location: 63228-63455 bp Feature: gene Location: 63534-64052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63546-63636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 546-63 63 6 bp Feature: domain Description: GIIM Note: maturase Location: 63690-63912 bp Feature: domain Description: GIIM Note: maturase Location: 63 690-63 912 bp Feature: gene Location: 64132-65853 bp Feature: domain Description: Resolvase Location: 64180-64591 bp Feature: domain Description: Resolvase Location: 64180-64591 bp Feature: domain Description: Recombinase Location: 64687-65044 bp Feature: domain Description: Recombinase Location: 64687-65044 bp Feature: domain Description: Zn_ribbon_recom Location: 65083-65287 bp Feature: domain Description: Zn_ribbon_recom Location: 65083 -65287 bp Feature: gene Location: 66141-66842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66426-66816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66426-66816 bp Feature: gene Location: 67221-67625 bp Feature: domain Description: INT_RitB_C_like Location: 67227-67584 bp Feature: domain Description: INT_RitB_C_like Location: 67227-67584 bp Feature: gene Location: 67679-68029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), INT_RitB_C_like (cd00797)

Seq: JMCL01000030.1 (222810 bp)
Overview 1 RT 1: 118810-121185 bp Neighborhood of RT #1 [118810, 121185] PRK06847 RVT-GII Feature: gene Location: 118810-119097 bp Feature: domain Description: PRK06847 Location: 118888-119095 bp Feature: domain Description: PRK0684 7 Location: 118888-119095 bp Feature: gene Location: 119207-119350 bp Feature: gene Location: 119386-120522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119434-120124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1194 34 -120124 bp Feature: gene Location: 120546-120887 bp Feature: gene Location: 120922-121185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06847 (hypothetical protein; Provisional), RVT-GII

Seq: JMCL01000003.1 (1839 bp)
Overview 1 RT 1: 89-1630 bp Neighborhood of RT #1 [89, 1630] RVT-GII GIIM Feature: gene Location: 89-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 0-965 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1223 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1223 bp Feature: gene Location: 1460-1630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)