myRT

myRT report for GCA_000692515.1_Esch_coli_BIDMC_71_V1

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Seq: KK736344.1 Escherichia coli BIDMC 71 genomic scaffold aeeas-supercont1.2, whole genome shotgun sequence (544959 bp)
Overview 1 RT 1: 382874-386756 bp Neighborhood of RT #1 [382874, 386761] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 382874-383332 bp Ori: KDG05456.1 Feature: domain Description: dut Location: 382880-383327 bp Feature: domain Description: dut Location: 382880-383327 bp Feature: gene Location: 383439-384035 bp Ori: KDG05457.1 Feature: domain Description: slmA Location: 383445-384021 bp Feature: domain Description: slmA Location: 383445-384021 bp Feature: gene Location: 384081-385040 bp Ori: KDG05458.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 384216-384765 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38421 6-384765 bp Feature: gene Location: 385338-385979 bp Ori: KDG05459.1 Feature: domain Description: pyrE Location: 385341-385974 bp Feature: domain Description: pyrE Location: 385341 -385974 bp Feature: gene Location: 386045-386761 bp Ori: KDG05460.1 Feature: domain Description: rph Location: 386048-386756 bp Feature: domain Description: rph Location: 386048-386756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: KK736345.1 Escherichia coli BIDMC 71 genomic scaffold aeeas-supercont1.3, whole genome shotgun sequence (411486 bp)
Overview 1 RT 1: 395208-400545 bp Neighborhood of RT #1 [395208, 400553] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 395208-396125 bp Ori: KDG03609.1 Feature: domain Description: PFLE_PFLC Location: 395244-396099 bp Feature: domain Description: PFLE_PFLC Location: 3952 44-396099 bp Feature: gene Location: 396262-397167 bp Feature: gene Location: 397653-398192 bp Ori: KDG03611.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397983-398061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397983-398061 bp Feature: gene Location: 398259-398741 bp Ori: KDG03612.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398268-398508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3982 68-398508 bp Feature: domain Description: GIIM Note: maturase Location: 398556-398736 bp Feature: domain Description: GIIM Note: maturase Location: 398556-398736 bp Feature: gene Location: 399063-399251 bp Feature: gene Location: 399324-400553 bp Ori: KDG03614.1 Feature: domain Description: YesM Location: 399804-400545 bp Feature: domain Description: YesM Location: 399804-400545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: KK736351.1 Escherichia coli BIDMC 71 genomic scaffold aeeas-supercont1.9, whole genome shotgun sequence (164011 bp)
Overview 1 RT 1: 65168-67917 bp Neighborhood of RT #1 [65168, 68012] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 65168-65401 bp Ori: KDF96005.1 Feature: domain Description: DUF905 Location: 65198-65396 bp Feature: domain Description: DUF905 Location: 65198-653 96 bp Feature: gene Location: 65464-65916 bp Ori: KDF96006.1 Feature: domain Description: PRK13732 Location: 65467-65914 bp Feature: domain Description: PRK13 73 2 Location: 65467-65914 bp Feature: gene Location: 66111-68012 bp Ori: KDF96007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66378-67209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663 78-67209 bp Feature: domain Description: Intron_maturas2 Location: 67323-67581 bp Feature: domain Description: Intron_maturas2 Location: 673 23 -67581 bp Feature: domain Description: HNHc Note: nucleases Location: 67755-67917 bp Feature: domain Description: HNHc Note: nucleases Location: 67755-67917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KK736343.1 Escherichia coli BIDMC 71 genomic scaffold aeeas-supercont1.1, whole genome shotgun sequence (2769733 bp)
Overview 1 RT 1: 2027739-2033602 bp Neighborhood of RT #1 [2027739, 2033616] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 2027739-2028995 bp Ori: KDG07936.1 Feature: domain Description: PRK13381 Location: 2027745-2028960 bp Feature: domain Description: PRK13381 Location: 202774 5-2028960 bp Feature: gene Location: 2028992-2030353 bp Ori: KDG07937.1 Feature: domain Description: DcuC Location: 2028995-2030327 bp Feature: domain Description: DcuC Location: 2028995-2030327 bp Feature: gene Location: 2030999-2031445 bp Ori: KDG07938.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031305-2031407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031305-20314 07 bp Feature: gene Location: 2031969-2033000 bp Ori: KDG07939.1 Feature: domain Description: Asparaginase_2 Location: 2032059-2032992 bp Feature: domain Description: Asparaginase_2 Location: 2032059-2032992 bp Feature: gene Location: 2033338-2033616 bp Ori: KDG07940.1 Feature: domain Description: DUF5339 Location: 2033401-2033602 bp Feature: domain Description: DUF5339 Location: 20334 01-2033602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)