myRT

myRT report for GCA_000692975.1_Kleb_pneu_BIDMC_60_V1

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Seq: KK736624.1 Klebsiella pneumoniae BIDMC 60 genomic scaffold aeead-supercont1.1, whole genome shotgun sequence (3895969 bp)
Overview 1 RT 1: 5781-9032 bp 2 RT 2: 1245976-1252459 bp Neighborhood of RT #1 [5781, 9034] RVT-GII PRK10276 umuC Neighborhood of RT #2 [1245976, 1252461] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 5781-7268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6186-6876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 86-6876 bp Feature: gene Location: 7261-7767 bp Feature: domain Description: PRK10276 Location: 7351-7762 bp Feature: domain Description: PRK1 0276 Location: 7351 -7762 bp Feature: gene Location: 7769-9034 bp Feature: domain Description: umuC Location: 7772-9032 bp Feature: domain Description: umuC Location: 7772-9032 bp Feature: gene Location: 1245976-1247034 bp Feature: domain Description: YccC Location: 1245982-1247020 bp Feature: domain Description: YccC Location: 1 245982-1 247020 bp Feature: gene Location: 1247133-1247606 bp Feature: domain Description: PRK10016 Location: 1247136-1247595 bp Feature: domain Description: PRK1 001 6 Location: 1 2471 36-1 247595 bp Feature: gene Location: 1247688-1249175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1248093-1248783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 248093-1 248783 bp Feature: gene Location: 1249693-1250856 bp Feature: domain Description: dacD Location: 1249696-1250851 bp Feature: domain Description: dacD Location: 1 249696-1 250851 bp Feature: gene Location: 1251037-1252461 bp Feature: domain Description: SbcB Location: 1251043-1252459 bp Feature: domain Description: SbcB Location: 1 251 043-1 252459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KK736625.1 Klebsiella pneumoniae BIDMC 60 genomic scaffold aeead-supercont1.2, whole genome shotgun sequence (1545647 bp)
Overview 1 RT 1: 581394-584801 bp 2 RT 2: 1022740-1028345 bp 3 RT 3: 1365242-1370660 bp Neighborhood of RT #1 [581394, 584902] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1022740, 1028371] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1365242, 1370662] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Feature: gene Location: 581394-582125 bp Feature: domain Description: Laminin_G_3 Location: 581715-582069 bp Feature: domain Description: Laminin_G_3 Location: 581715-582 069 bp Feature: gene Location: 582122-582331 bp Feature: gene Location: 582781-584268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583186-583876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583186-583876 bp Feature: gene Location: 584346-584585 bp Feature: gene Location: 584585-584902 bp Feature: domain Description: PRK10276 Location: 584591-584705 bp Feature: domain Description: PRK102 76 Location: 584591-584705 bp Feature: domain Description: PRK10276 Location: 584732-584801 bp Feature: domain Description: PRK102 76 Location: 584732 -584801 bp Feature: gene Location: 1022740-1023303 bp Feature: domain Description: YbjK Location: 1022746-1023283 bp Feature: domain Description: YbjK Location: 102 2 746-102 32 83 bp Feature: gene Location: 1023426-1024478 bp Feature: domain Description: int Location: 1023429-1024428 bp Feature: domain Description: int Location: 102 342 9-102 442 8 bp Feature: gene Location: 1024894-1026381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025299-1025989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 52 99-102 5989 bp Feature: gene Location: 1026480-1027424 bp Feature: gene Location: 1027436-1028371 bp Feature: domain Description: Phage_CI_repr Location: 1027520-1027703 bp Feature: domain Description: Phage_CI_repr Location: 102 752 0-102 7703 bp Feature: domain Description: Phage_CI_repr Location: 1027832-1028024 bp Feature: domain Description: Phage_CI_repr Location: 102 7832 -102 802 4 bp Feature: domain Description: Phage_CI_C Location: 1028051-1028345 bp Feature: domain Description: Phage_CI_C Location: 102 8051-102 8345 bp Feature: gene Location: 1365242-1366381 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1365425-1366325 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 136542 5-136632 5 bp Feature: gene Location: 1366552-1366794 bp Feature: domain Description: DinI Location: 1366603-1366783 bp Feature: domain Description: DinI Location: 1366603-1366783 bp Feature: gene Location: 1367409-1368896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1367814-1368504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1367814-1368504 bp Feature: gene Location: 1368975-1369394 bp Feature: domain Description: PRK10276 Location: 1368978-1369389 bp Feature: domain Description: PRK102 76 Location: 1368978-1369389 bp Feature: gene Location: 1369397-1370662 bp Feature: domain Description: umuC Location: 1369400-1370660 bp Feature: domain Description: umuC Location: 1369400-1370660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)

Seq: KK736628.1 Klebsiella pneumoniae BIDMC 60 genomic scaffold aeead-supercont1.5, whole genome shotgun sequence (84216 bp)
Overview 1 RT 1: 57521-62512 bp Neighborhood of RT #1 [57521, 62517] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 57521-57946 bp Feature: domain Description: Antirestrict Location: 57656-57944 bp Feature: domain Description: Antirestrict Location: 57656-57944 bp Feature: gene Location: 58467-58697 bp Feature: gene Location: 58931-60418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59336-60026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593 3 6-60026 bp Feature: gene Location: 60821-61246 bp Feature: domain Description: PRK10276 Location: 60824-61232 bp Feature: domain Description: PRK10276 Location: 60824-6123 2 bp Feature: gene Location: 61246-62517 bp Feature: domain Description: umuC Location: 61249-62512 bp Feature: domain Description: umuC Location: 61249-62512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)