myRT

myRT report for GCA_000693115.1_Kleb_pneu_BWH_48_V1

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Seq: KK736698.1 Klebsiella pneumoniae BWH 48 genomic scaffold aedZP-supercont1.1, whole genome shotgun sequence (3115405 bp)
Overview 1 RT 1: 2866259-2871299 bp Neighborhood of RT #1 [2866259, 2871299] SR_ResInv HTH_psq RVT-AbiP2 cupin_WbuC Feature: gene Location: 2866259-2866489 bp Feature: gene Location: 2866807-2867349 bp Ori: KDH53227.1 Feature: domain Description: SR_ResInv Location: 2866819-2867185 bp Feature: domain Description: SR_ResInv Location: 286681 9-28671 85 bp Feature: domain Description: HTH_psq Location: 2867275-2867326 bp Feature: domain Description: HTH_psq Location: 2867275-2867326 bp Feature: gene Location: 2867439-2868980 bp Ori: KDH53228.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2867868-2868330 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2867868-2868330 bp Feature: gene Location: 2869569-2870051 bp Ori: KDH53229.1 Feature: domain Description: cupin_WbuC Location: 2869581-2869965 bp Feature: domain Description: cupin_WbuC Location: 2869581 -2869965 bp Feature: gene Location: 2870418-2871299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_ResInv (cd03768), HTH_psq (pfam05225), RVT-AbiP2, cupin_WbuC (TIGR04366)

Seq: KK736702.1 Klebsiella pneumoniae BWH 48 genomic scaffold aedZP-supercont1.5, whole genome shotgun sequence (210456 bp)
Overview 1 RT 1: 12486-16925 bp Neighborhood of RT #1 [12486, 16927] RVT-GII Antirestrict Feature: gene Location: 12486-12578 bp Feature: gene Location: 13463-13563 bp Feature: gene Location: 14085-15518 bp Ori: KDH48692.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14412-15126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14412 -1512 6 bp Feature: gene Location: 15752-15982 bp Feature: gene Location: 16502-16927 bp Ori: KDH48694.1 Feature: domain Description: Antirestrict Location: 16637-16925 bp Feature: domain Description: Antirestrict Location: 16637-1692 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Antirestrict (pfam03230)

Seq: KK736699.1 Klebsiella pneumoniae BWH 48 genomic scaffold aedZP-supercont1.2, whole genome shotgun sequence (1236225 bp)
Overview 1 RT 1: 25140-29628 bp 2 RT 2: 1091079-1096050 bp Neighborhood of RT #1 [25140, 29792] PRK09692 RVT-Retrons COG3950 TIGR02646 Neighborhood of RT #2 [1091079, 1096055] PRK09692 PRK09692 SLATT_5 RVT-UG17 Psu PRK00872 Feature: gene Location: 25140-25562 bp Ori: KDH51649.1 Feature: domain Description: PRK09692 Location: 25143-25524 bp Feature: domain Description: PRK09692 Location: 25143 -25524 bp Feature: gene Location: 25564-26205 bp Feature: gene Location: 26631-27596 bp Ori: KDH51651.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26739-27336 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2673 9-273 3 6 bp Feature: gene Location: 27574-29166 bp Ori: KDH51652.1 Feature: domain Description: COG3950 Location: 27754-28975 bp Feature: domain Description: COG3 950 Location: 27754-28975 bp Feature: gene Location: 29163-29792 bp Ori: KDH51653.1 Feature: domain Description: TIGR02646 Location: 29253-29628 bp Feature: domain Description: TIGR02646 Location: 29253 -29628 bp Feature: gene Location: 1091079-1091873 bp Ori: KDH51273.1 Feature: domain Description: PRK09692 Location: 1091088-1091451 bp Feature: domain Description: PRK09692 Location: 1091088-1091451 bp Feature: domain Description: PRK09692 Location: 1091469-1091844 bp Feature: domain Description: PRK09692 Location: 1091469-1091844 bp Feature: gene Location: 1092105-1092746 bp Ori: KDH51274.1 Feature: domain Description: SLATT_5 Location: 1092108-1092711 bp Feature: domain Description: SLATT_5 Location: 1092108-1092711 bp Feature: gene Location: 1092941-1094350 bp Ori: KDH51275.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1093178-1093790 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1093 178-1093 790 bp Feature: gene Location: 1095047-1095226 bp Ori: KDH51276.1 Feature: domain Description: Psu Location: 1095065-1095224 bp Feature: domain Description: Psu Location: 1095065-1095224 bp Feature: gene Location: 1095588-1096055 bp Ori: KDH51277.1 Feature: domain Description: PRK00872 Location: 1095594-1096050 bp Feature: domain Description: PRK00872 Location: 1095594-1096050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455), PRK00872 (hypothetical protein; Provisional)