myRT

myRT report for GCA_000693455.1_Kleb_pneu_CHS_24_V1

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Seq: KK736897.1 Klebsiella pneumoniae CHS 24 genomic scaffold aedZO-supercont1.1, whole genome shotgun sequence (4598511 bp)
Overview 1 RT 1: 584790-591500 bp 2 RT 2: 1029539-1042819 bp 3 RT 3: 1276199-1280720 bp 4 RT 4: 1375839-1381257 bp 5 RT 5: 2744462-2750945 bp Neighborhood of RT #1 [584790, 591691] Collar RVT-GII PRK10276 Neighborhood of RT #2 [1029539, 1042824] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C dam Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1276199, 1280722] bssS PRK10597 RVT-GII PRK05451 PRK10598 Neighborhood of RT #4 [1375839, 1381259] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [2744462, 2750947] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 584790-585959 bp Feature: domain Description: Collar Location: 585492-585663 bp Feature: domain Description: Collar Location: 585492-585663 bp Feature: gene Location: 585996-589154 bp Feature: gene Location: 589573-591057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 589975-590665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 589975-590665 bp Feature: gene Location: 591135-591374 bp Feature: gene Location: 591374-591691 bp Feature: domain Description: PRK10276 Location: 591380-591500 bp Feature: domain Description: PRK1 0276 Location: 591 380-591 500 bp Feature: gene Location: 1029539-1030102 bp Feature: domain Description: YbjK Location: 1029545-1030082 bp Feature: domain Description: YbjK Location: 1 029545-1 030082 bp Feature: gene Location: 1030225-1031277 bp Feature: domain Description: int Location: 1030228-1031227 bp Feature: domain Description: int Location: 1 030228-1 031 227 bp Feature: gene Location: 1031696-1033180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032098-1032788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 032098-1 032788 bp Feature: gene Location: 1033279-1034223 bp Feature: gene Location: 1034235-1035170 bp Feature: domain Description: Phage_CI_repr Location: 1034319-1034502 bp Feature: domain Description: Phage_CI_repr Location: 1 03431 9-1 034502 bp Feature: domain Description: Phage_CI_repr Location: 1034631-1034823 bp Feature: domain Description: Phage_CI_repr Location: 1 034631 -1 034823 bp Feature: domain Description: Phage_CI_C Location: 1034850-1035144 bp Feature: domain Description: Phage_CI_C Location: 1 034850-1 0351 44 bp Feature: gene Location: 1037060-1037917 bp Feature: domain Description: dam Location: 1037063-1037840 bp Feature: domain Description: dam Location: 1 037063-1 037840 bp Feature: gene Location: 1037914-1040328 bp Feature: domain Description: Phage_GPA Location: 1038478-1039444 bp Feature: domain Description: Phage_GPA Location: 1 038478-1 039444 bp Feature: gene Location: 1040807-1042291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041209-1041899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 209-1 041 899 bp Feature: gene Location: 1042392-1042580 bp Feature: gene Location: 1042591-1042824 bp Feature: domain Description: DinI Location: 1042633-1042819 bp Feature: domain Description: DinI Location: 1 042633-1 04281 9 bp Feature: gene Location: 1276199-1276453 bp Feature: domain Description: bssS Location: 1276202-1276451 bp Feature: domain Description: bssS Location: 1 276202-1 276451 bp Feature: gene Location: 1276756-1277007 bp Feature: domain Description: PRK10597 Location: 1276759-1276996 bp Feature: domain Description: PRK1 0597 Location: 1 276759-1 276996 bp Feature: gene Location: 1277413-1278897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1277815-1278505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27781 5-1 278505 bp Feature: gene Location: 1278990-1280036 bp Feature: domain Description: PRK05451 Location: 1279005-1280031 bp Feature: domain Description: PRK05451 Location: 1 279005-1 280031 bp Feature: gene Location: 1280162-1280722 bp Feature: domain Description: PRK10598 Location: 1280165-1280720 bp Feature: domain Description: PRK1 0598 Location: 1 2801 65-1 280720 bp Feature: gene Location: 1375839-1376978 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1376022-1376922 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 376022-1 376922 bp Feature: gene Location: 1377149-1377391 bp Feature: domain Description: DinI Location: 1377200-1377380 bp Feature: domain Description: DinI Location: 1 377200-1 377380 bp Feature: gene Location: 1378009-1379493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1378411-1379101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37841 1 -1 3791 01 bp Feature: gene Location: 1379572-1379991 bp Feature: domain Description: PRK10276 Location: 1379575-1379986 bp Feature: domain Description: PRK1 0276 Location: 1 379575-1 379986 bp Feature: gene Location: 1379994-1381259 bp Feature: domain Description: umuC Location: 1379997-1381257 bp Feature: domain Description: umuC Location: 1 379997-1 381 257 bp Feature: gene Location: 2744462-2745520 bp Feature: domain Description: YccC Location: 2744468-2745506 bp Feature: domain Description: YccC Location: 2744468-2745506 bp Feature: gene Location: 2745619-2746092 bp Feature: domain Description: PRK10016 Location: 2745622-2746081 bp Feature: domain Description: PRK1 001 6 Location: 2745622-2746081 bp Feature: gene Location: 2746174-2747658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2746576-2747266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2746576-2747266 bp Feature: gene Location: 2748179-2749342 bp Feature: domain Description: dacD Location: 2748182-2749337 bp Feature: domain Description: dacD Location: 27481 82-2749337 bp Feature: gene Location: 2749523-2750947 bp Feature: domain Description: SbcB Location: 2749529-2750945 bp Feature: domain Description: SbcB Location: 2749529-2750945 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Associated domains:myRT Collar (pfam07484), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183)
bssS (PRK12301), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10598 (lipoprotein; Provisional), GT9_LPS_heptosyltransferase (cd03789), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)