myRT

myRT report for GCA_000693755.1_Kleb_pneu_CHS_39_V1

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Seq: KK737093.1 Klebsiella pneumoniae CHS 39 genomic scaffold aedYW-supercont1.4, whole genome shotgun sequence (59873 bp)
Overview 1 RT 1: 36565-42047 bp Neighborhood of RT #1 [36565, 42055] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Feature: gene Location: 36565-37236 bp Feature: domain Description: Plasmid_stab_B Location: 36580-36787 bp Feature: domain Description: Plasmid_stab_B Location: 36580-36787 bp Feature: domain Description: Plasmid_stab_B Location: 36892-37099 bp Feature: domain Description: Plasmid_stab_B Location: 36892-37099 bp Feature: gene Location: 37239-38210 bp Feature: domain Description: StbA Location: 37242-38187 bp Feature: domain Description: StbA Location: 37242-381 87 bp Feature: gene Location: 38783-40270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39188-39878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 88-39878 bp Feature: gene Location: 40353-40784 bp Feature: domain Description: PRK10276 Location: 40404-40767 bp Feature: domain Description: PRK1 0276 Location: 40404-40767 bp Feature: gene Location: 40784-42055 bp Feature: domain Description: umuC Location: 40787-42047 bp Feature: domain Description: umuC Location: 40787-42047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: KK737090.1 Klebsiella pneumoniae CHS 39 genomic scaffold aedYW-supercont1.1, whole genome shotgun sequence (4029329 bp)
Overview 1 RT 1: 1-5069 bp 2 RT 2: 1372030-1378513 bp Neighborhood of RT #1 [1, 5071] PinE RVT-GII PRK10276 umuC Neighborhood of RT #2 [1372030, 1378515] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 1-423 bp Feature: domain Description: PinE Location: 4-415 bp Feature: domain Description: PinE Location: 4-415 bp Feature: gene Location: 1818-3305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2223-2913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 2 3-2 913 bp Feature: gene Location: 3298-3804 bp Feature: domain Description: PRK10276 Location: 3388-3799 bp Feature: domain Description: PRK102 76 Location: 3388-3799 bp Feature: gene Location: 3806-5071 bp Feature: domain Description: umuC Location: 3809-5069 bp Feature: domain Description: umuC Location: 3809-5069 bp Feature: gene Location: 1372030-1373088 bp Feature: domain Description: YccC Location: 1372036-1373074 bp Feature: domain Description: YccC Location: 1372 036-1373074 bp Feature: gene Location: 1373187-1373660 bp Feature: domain Description: PRK10016 Location: 1373190-1373649 bp Feature: domain Description: PRK10016 Location: 1373190-1373649 bp Feature: gene Location: 1373742-1375229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374147-1374837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374147-1374837 bp Feature: gene Location: 1375747-1376910 bp Feature: domain Description: dacD Location: 1375750-1376905 bp Feature: domain Description: dacD Location: 1375750-1376905 bp Feature: gene Location: 1377091-1378515 bp Feature: domain Description: SbcB Location: 1377097-1378513 bp Feature: domain Description: SbcB Location: 1377097-1378513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KK737092.1 Klebsiella pneumoniae CHS 39 genomic scaffold aedYW-supercont1.3, whole genome shotgun sequence (78978 bp)
Overview 1 RT 1: 75492-78686 bp Neighborhood of RT #1 [75492, 78978] umuC PRK10276 RVT-GII Feature: gene Location: 75492-76763 bp Feature: domain Description: umuC Location: 75495-76758 bp Feature: domain Description: umuC Location: 75495-76758 bp Feature: gene Location: 76763-77188 bp Feature: domain Description: PRK10276 Location: 76766-77174 bp Feature: domain Description: PRK10276 Location: 76766-77174 bp Feature: gene Location: 77591-78978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77996-78686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77996-78686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: KK737091.1 Klebsiella pneumoniae CHS 39 genomic scaffold aedYW-supercont1.2, whole genome shotgun sequence (1564573 bp)
Overview 1 RT 1: 592143-595550 bp 2 RT 2: 1034783-1040388 bp 3 RT 3: 1378071-1383489 bp Neighborhood of RT #1 [592143, 595651] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1034783, 1040414] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1378071, 1383491] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Feature: gene Location: 592143-592874 bp Feature: domain Description: Laminin_G_3 Location: 592464-592818 bp Feature: domain Description: Laminin_G_3 Location: 5924 64 -592818 bp Feature: gene Location: 592871-593080 bp Feature: gene Location: 593530-595017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593935-594625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593935-594 625 bp Feature: gene Location: 595095-595334 bp Feature: gene Location: 595334-595651 bp Feature: domain Description: PRK10276 Location: 595340-595454 bp Feature: domain Description: PRK10276 Location: 59534 0-5954 54 bp Feature: domain Description: PRK10276 Location: 595481-595550 bp Feature: domain Description: PRK10276 Location: 5954 81-595550 bp Feature: gene Location: 1034783-1035346 bp Feature: domain Description: YbjK Location: 1034789-1035326 bp Feature: domain Description: YbjK Location: 1034 789-1035326 bp Feature: gene Location: 1035469-1036521 bp Feature: domain Description: int Location: 1035472-1036471 bp Feature: domain Description: int Location: 10354 72-10364 71 bp Feature: gene Location: 1036937-1038424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037342-1038032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103734 2-1038032 bp Feature: gene Location: 1038523-1039467 bp Feature: gene Location: 1039479-1040414 bp Feature: domain Description: Phage_CI_repr Location: 1039563-1039746 bp Feature: domain Description: Phage_CI_repr Location: 1039563-103974 6 bp Feature: domain Description: Phage_CI_repr Location: 1039875-1040067 bp Feature: domain Description: Phage_CI_repr Location: 1039875-104 0067 bp Feature: domain Description: Phage_CI_C Location: 1040094-1040388 bp Feature: domain Description: Phage_CI_C Location: 104 0094 -104 0388 bp Feature: gene Location: 1378071-1379210 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1378254-1379154 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1378254 -1379154 bp Feature: gene Location: 1379381-1379623 bp Feature: domain Description: DinI Location: 1379432-1379612 bp Feature: domain Description: DinI Location: 13794 32-1379612 bp Feature: gene Location: 1380238-1381725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1380643-1381333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138064 3-1381333 bp Feature: gene Location: 1381804-1382223 bp Feature: domain Description: PRK10276 Location: 1381807-1382218 bp Feature: domain Description: PRK10276 Location: 1381807-1382218 bp Feature: gene Location: 1382226-1383491 bp Feature: domain Description: umuC Location: 1382229-1383489 bp Feature: domain Description: umuC Location: 1382229-13834 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)