myRT

myRT report for GCA_000693775.1_Kleb_pneu_CHS_40_V1

Download annotations/find similar RTs

Seq: KK737109.1 Klebsiella pneumoniae CHS 40 genomic scaffold aeeaR-supercont1.7, whole genome shotgun sequence (71276 bp)
Overview 1 RT 1: 55032-60514 bp Neighborhood of RT #1 [55032, 60522] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Feature: gene Location: 55032-55703 bp Feature: domain Description: Plasmid_stab_B Location: 55047-55254 bp Feature: domain Description: Plasmid_stab_B Location: 55047-55254 bp Feature: domain Description: Plasmid_stab_B Location: 55359-55566 bp Feature: domain Description: Plasmid_stab_B Location: 55359-55566 bp Feature: gene Location: 55706-56677 bp Feature: domain Description: StbA Location: 55709-56654 bp Feature: domain Description: StbA Location: 55709-56654 bp Feature: gene Location: 57250-58737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57655-58345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57655-58345 bp Feature: gene Location: 58820-59251 bp Feature: domain Description: PRK10276 Location: 58871-59234 bp Feature: domain Description: PRK1 0276 Location: 58871 -59234 bp Feature: gene Location: 59251-60522 bp Feature: domain Description: umuC Location: 59254-60514 bp Feature: domain Description: umuC Location: 59254-6051 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: KK737103.1 Klebsiella pneumoniae CHS 40 genomic scaffold aeeaR-supercont1.1, whole genome shotgun sequence (2994001 bp)
Overview 1 RT 1: 884711-891194 bp Neighborhood of RT #1 [884711, 891196] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 884711-885769 bp Feature: domain Description: YccC Location: 884717-885755 bp Feature: domain Description: YccC Location: 884717-885755 bp Feature: gene Location: 885868-886341 bp Feature: domain Description: PRK10016 Location: 885871-886330 bp Feature: domain Description: PRK10016 Location: 885871-886330 bp Feature: gene Location: 886423-887910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886828-887518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88682 8-887518 bp Feature: gene Location: 888428-889591 bp Feature: domain Description: dacD Location: 888431-889586 bp Feature: domain Description: dacD Location: 888431-889586 bp Feature: gene Location: 889772-891196 bp Feature: domain Description: SbcB Location: 889778-891194 bp Feature: domain Description: SbcB Location: 889778-891194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: KK737107.1 Klebsiella pneumoniae CHS 40 genomic scaffold aeeaR-supercont1.5, whole genome shotgun sequence (137762 bp)
Overview 1 RT 1: 65846-70840 bp Neighborhood of RT #1 [65846, 70842] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 65846-67117 bp Feature: domain Description: umuC Location: 65849-67112 bp Feature: domain Description: umuC Location: 65849-67112 bp Feature: gene Location: 67117-67542 bp Feature: domain Description: PRK10276 Location: 67120-67528 bp Feature: domain Description: PRK10276 Location: 67120-67528 bp Feature: gene Location: 67945-69432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68350-69040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683 50-69040 bp Feature: gene Location: 69666-69896 bp Feature: gene Location: 70417-70842 bp Feature: domain Description: Antirestrict Location: 70552-70840 bp Feature: domain Description: Antirestrict Location: 70552-70840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: KK737104.1 Klebsiella pneumoniae CHS 40 genomic scaffold aeeaR-supercont1.2, whole genome shotgun sequence (1791983 bp)
Overview 1 RT 1: 773565-779170 bp 2 RT 2: 1116478-1121896 bp 3 RT 3: 1391171-1395369 bp Neighborhood of RT #1 [773565, 779196] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1116478, 1121898] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [1391171, 1395374] Laminin_G_3 RVT-GII PRK10597 Feature: gene Location: 773565-774128 bp Feature: domain Description: YbjK Location: 773571-774108 bp Feature: domain Description: YbjK Location: 773571-774 108 bp Feature: gene Location: 774251-775303 bp Feature: domain Description: int Location: 774254-775253 bp Feature: domain Description: int Location: 774 254 -775253 bp Feature: gene Location: 775719-777206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776124-776814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776124 -776814 bp Feature: gene Location: 777305-778249 bp Feature: gene Location: 778261-779196 bp Feature: domain Description: Phage_CI_repr Location: 778345-778528 bp Feature: domain Description: Phage_CI_repr Location: 77834 5-778528 bp Feature: domain Description: Phage_CI_repr Location: 778657-778849 bp Feature: domain Description: Phage_CI_repr Location: 778657-77884 9 bp Feature: domain Description: Phage_CI_C Location: 778876-779170 bp Feature: domain Description: Phage_CI_C Location: 778876-779170 bp Feature: gene Location: 1116478-1117617 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1116661-1117561 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1116661-1117561 bp Feature: gene Location: 1117788-1118030 bp Feature: domain Description: DinI Location: 1117839-1118019 bp Feature: domain Description: DinI Location: 1117839-1118019 bp Feature: gene Location: 1118645-1120132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119050-1119740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119050-111974 0 bp Feature: gene Location: 1120211-1120630 bp Feature: domain Description: PRK10276 Location: 1120214-1120625 bp Feature: domain Description: PRK10276 Location: 1120214 -1120625 bp Feature: gene Location: 1120633-1121898 bp Feature: domain Description: umuC Location: 1120636-1121896 bp Feature: domain Description: umuC Location: 1120636-1121896 bp Feature: gene Location: 1391171-1391902 bp Feature: domain Description: Laminin_G_3 Location: 1391507-1391846 bp Feature: domain Description: Laminin_G_3 Location: 1391507-139184 6 bp Feature: gene Location: 1391899-1392087 bp Feature: gene Location: 1393054-1394541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1393459-1394149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13934 59-1394 14 9 bp Feature: gene Location: 1394619-1394903 bp Feature: gene Location: 1395126-1395374 bp Feature: domain Description: PRK10597 Location: 1395129-1395369 bp Feature: domain Description: PRK10597 Location: 1395129-1395369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Laminin_G_3 (pfam13385)
PRK10597 (DNA damage-inducible protein I; Provisional)