myRT

myRT report for GCA_000693795.1_Kleb_pneu_CHS_41_V1

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Seq: KK737113.1 Klebsiella pneumoniae CHS 41 genomic scaffold aedZp-supercont1.1, whole genome shotgun sequence (4035410 bp)
Overview 1 RT 1: 324-6189 bp 2 RT 2: 1374470-1380953 bp Neighborhood of RT #1 [324, 6191] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #2 [1374470, 1380955] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 324-1028 bp Feature: domain Description: Rve Location: 327-972 bp Feature: domain Description: Rve Location: 327-972 bp Feature: gene Location: 1094-1543 bp Feature: domain Description: PinE Location: 1103-1535 bp Feature: domain Description: PinE Location: 1 1 03-1 535 bp Feature: gene Location: 2938-4425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3343-4033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3343-4033 bp Feature: gene Location: 4418-4924 bp Feature: domain Description: PRK10276 Location: 4508-4919 bp Feature: domain Description: PRK1 0276 Location: 4508-491 9 bp Feature: gene Location: 4926-6191 bp Feature: domain Description: umuC Location: 4929-6189 bp Feature: domain Description: umuC Location: 4929-61 89 bp Feature: gene Location: 1374470-1375528 bp Feature: domain Description: YccC Location: 1374476-1375514 bp Feature: domain Description: YccC Location: 1 374476-1 37551 4 bp Feature: gene Location: 1375627-1376100 bp Feature: domain Description: PRK10016 Location: 1375630-1376089 bp Feature: domain Description: PRK1 001 6 Location: 1 375630-1 376089 bp Feature: gene Location: 1376182-1377669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376587-1377277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 376587-1 377277 bp Feature: gene Location: 1378187-1379350 bp Feature: domain Description: dacD Location: 1378190-1379345 bp Feature: domain Description: dacD Location: 1 3781 90-1 379345 bp Feature: gene Location: 1379531-1380955 bp Feature: domain Description: SbcB Location: 1379537-1380953 bp Feature: domain Description: SbcB Location: 1 379537-1 380953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, Rve (COG3316), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: KK737115.1 Klebsiella pneumoniae CHS 41 genomic scaffold aedZp-supercont1.3, whole genome shotgun sequence (97960 bp)
Overview 1 RT 1: 94474-97668 bp Neighborhood of RT #1 [94474, 97960] umuC PRK10276 RVT-GII Feature: gene Location: 94474-95745 bp Feature: domain Description: umuC Location: 94477-95740 bp Feature: domain Description: umuC Location: 94477-95740 bp Feature: gene Location: 95745-96170 bp Feature: domain Description: PRK10276 Location: 95748-96156 bp Feature: domain Description: PRK102 76 Location: 95748-96156 bp Feature: gene Location: 96573-97960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96978-97668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96978-97668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: KK737114.1 Klebsiella pneumoniae CHS 41 genomic scaffold aedZp-supercont1.2, whole genome shotgun sequence (1552185 bp)
Overview 1 RT 1: 589129-592536 bp 2 RT 2: 1031769-1037374 bp 3 RT 3: 1375061-1380479 bp Neighborhood of RT #1 [589129, 592637] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1031769, 1037400] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1375061, 1380481] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Feature: gene Location: 589129-589860 bp Feature: domain Description: Laminin_G_3 Location: 589450-589804 bp Feature: domain Description: Laminin_G_3 Location: 589450-589804 bp Feature: gene Location: 589857-590066 bp Feature: gene Location: 590516-592003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590921-591611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590921-591611 bp Feature: gene Location: 592081-592320 bp Feature: gene Location: 592320-592637 bp Feature: domain Description: PRK10276 Location: 592326-592440 bp Feature: domain Description: PRK10276 Location: 5923 26-592440 bp Feature: domain Description: PRK10276 Location: 592467-592536 bp Feature: domain Description: PRK10276 Location: 592467-59253 6 bp Feature: gene Location: 1031769-1032332 bp Feature: domain Description: YbjK Location: 1031775-1032312 bp Feature: domain Description: YbjK Location: 103 1775-103 23 12 bp Feature: gene Location: 1032455-1033507 bp Feature: domain Description: int Location: 1032458-1033457 bp Feature: domain Description: int Location: 103 2458-103 3 457 bp Feature: gene Location: 1033923-1035410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034328-1035018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 43 28-103 5018 bp Feature: gene Location: 1035509-1036453 bp Feature: gene Location: 1036465-1037400 bp Feature: domain Description: Phage_CI_repr Location: 1036549-1036732 bp Feature: domain Description: Phage_CI_repr Location: 103 6549-103 673 2 bp Feature: domain Description: Phage_CI_repr Location: 1036861-1037053 bp Feature: domain Description: Phage_CI_repr Location: 103 6861-103 7053 bp Feature: domain Description: Phage_CI_C Location: 1037080-1037374 bp Feature: domain Description: Phage_CI_C Location: 103 7080-103 73 74 bp Feature: gene Location: 1375061-1376200 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1375244-1376144 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 13 75244-13 76144 bp Feature: gene Location: 1376371-1376613 bp Feature: domain Description: DinI Location: 1376422-1376602 bp Feature: domain Description: DinI Location: 13 76422-13 76602 bp Feature: gene Location: 1377228-1378715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377633-1378323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 7763 3 -13 783 23 bp Feature: gene Location: 1378794-1379213 bp Feature: domain Description: PRK10276 Location: 1378797-1379208 bp Feature: domain Description: PRK10276 Location: 13 78797-13 79208 bp Feature: gene Location: 1379216-1380481 bp Feature: domain Description: umuC Location: 1379219-1380479 bp Feature: domain Description: umuC Location: 13 79219-13 80479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)

Seq: KK737116.1 Klebsiella pneumoniae CHS 41 genomic scaffold aedZp-supercont1.4, whole genome shotgun sequence (73964 bp)
Overview 1 RT 1: 45233-50715 bp Neighborhood of RT #1 [45233, 50723] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Feature: gene Location: 45233-45904 bp Feature: domain Description: Plasmid_stab_B Location: 45248-45455 bp Feature: domain Description: Plasmid_stab_B Location: 4 524 8-4 54 55 bp Feature: domain Description: Plasmid_stab_B Location: 45560-45767 bp Feature: domain Description: Plasmid_stab_B Location: 4 5560-4 5767 bp Feature: gene Location: 45907-46878 bp Feature: domain Description: StbA Location: 45910-46855 bp Feature: domain Description: StbA Location: 4 5910-4 6855 bp Feature: gene Location: 47451-48938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47856-48546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 7856-4 854 6 bp Feature: gene Location: 49021-49452 bp Feature: domain Description: PRK10276 Location: 49072-49435 bp Feature: domain Description: PRK10276 Location: 4 9072-4 94 35 bp Feature: gene Location: 49452-50723 bp Feature: domain Description: umuC Location: 49455-50715 bp Feature: domain Description: umuC Location: 4 94 55-50715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)