myRT

myRT report for GCA_000699365.1_7996-1

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Seq: JDWS01000016.1 (98735 bp)
Overview 1 RT 1: 55830-59360 bp Neighborhood of RT #1 [55830, 59360] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 55830-56483 bp Feature: domain Description: PRK13699 Location: 55875-56481 bp Feature: domain Description: PRK1 3699 Location: 55875-56481 bp Feature: gene Location: 56590-56790 bp Feature: gene Location: 57063-58763 bp Feature: domain Description: RVT_N Location: 57117-57360 bp Feature: domain Description: RVT_N Location: 571 1 7-57360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57405-58041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57405-58041 bp Feature: domain Description: GIIM Note: maturase Location: 58092-58326 bp Feature: domain Description: GIIM Note: maturase Location: 58092-58326 bp Feature: domain Description: HNHc Note: nucleases Location: 58557-58707 bp Feature: domain Description: HNHc Note: nucleases Location: 58557-58707 bp Feature: gene Location: 58846-59073 bp Feature: gene Location: 59139-59360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JDWS01000013.1 (64704 bp)
Overview 1 RT 1: 4230-8052 bp Neighborhood of RT #1 [4230, 8052] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 4230-4532 bp Feature: domain Description: InsE Location: 4239-4521 bp Feature: domain Description: InsE Location: 42 39-452 1 bp Feature: gene Location: 4559-4984 bp Feature: domain Description: PHA02517 Location: 4583-4919 bp Feature: domain Description: PHA02 517 Location: 4583-4919 bp Feature: gene Location: 5576-7099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5849-6581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5849-6581 bp Feature: domain Description: GIIM Note: maturase Location: 6656-6854 bp Feature: domain Description: GIIM Note: maturase Location: 6656-6854 bp Feature: gene Location: 7186-7371 bp Feature: gene Location: 7618-8052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JDWS01000015.1 (102346 bp)
Overview 1 RT 1: 67-2900 bp Neighborhood of RT #1 [67, 2900] RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 67-1437 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 328-784 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 28-784 bp Feature: gene Location: 1539-2576 bp Feature: domain Description: HTH_29 Location: 1635-1806 bp Feature: domain Description: HTH_29 Location: 163 5-1806 bp Feature: domain Description: HTH_33 Location: 1839-2001 bp Feature: domain Description: HTH_3 3 Location: 183 9-2001 bp Feature: domain Description: DDE_3 Location: 2043-2472 bp Feature: domain Description: DDE_3 Location: 2043 -2472 bp Feature: gene Location: 2610-2900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)