myRT

myRT report for GCA_000699725.1_ASM69972v1

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Seq: JNHF01000147.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.146, whole genome shotgun sequence (204072 bp)
Overview 1 RT 1: 83170-93339 bp 2 RT 2: 181245-191942 bp Neighborhood of RT #1 [83170, 93377] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #2 [181245, 191942] DUF1566 RVT-DGRs DUF1566 Feature: gene Location: 83170-89958 bp Ori: KDS13856.1 Feature: domain Description: Laminin_G_3 Location: 85606-85987 bp Feature: domain Description: Laminin_G_3 Location: 85606-85987 bp Feature: domain Description: pfam08757 Location: 86782-87106 bp Feature: domain Description: pfam08757 Location: 86782-871 06 bp Feature: domain Description: LRR_AMN1 Location: 87718-88162 bp Feature: domain Description: LRR_AMN1 Location: 8771 8-881 62 bp Feature: gene Location: 89955-90089 bp Feature: gene Location: 90667-91686 bp Ori: KDS13858.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90670-91198 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90670-91 1 98 bp Feature: gene Location: 91688-92182 bp Feature: gene Location: 92232-93377 bp Ori: KDS13860.1 Feature: domain Description: Arm-DNA-bind_5 Location: 92256-92502 bp Feature: domain Description: Arm-DNA-bind_5 Location: 92256-92502 bp Feature: domain Description: Phage_int_SAM_5 Location: 92541-92826 bp Feature: domain Description: Phage_int_SAM_5 Location: 92541 -92826 bp Feature: domain Description: INTN1_C_like Location: 92865-93339 bp Feature: domain Description: INTN1 _C_like Location: 92865-93339 bp Feature: gene Location: 181245-183074 bp Feature: gene Location: 183137-183490 bp Feature: gene Location: 183481-184902 bp Ori: KDS13953.1 Feature: domain Description: DUF1566 Location: 183553-183697 bp Feature: domain Description: DUF1 566 Location: 1 83553-1 83697 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 183886-184627 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 83886-1 84627 bp Feature: gene Location: 185446-191475 bp Ori: KDS13954.1 Feature: domain Description: DUF1566 Location: 191161-191464 bp Feature: domain Description: DUF1 566 Location: 1 91 1 61 -1 91 464 bp Feature: gene Location: 191682-191942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), DUF1566 (pfam07603)

Seq: JNHF01000181.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.180, whole genome shotgun sequence (108624 bp)
Overview 1 RT 1: 55611-59152 bp Neighborhood of RT #1 [55611, 59166] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 55611-55907 bp Ori: KDS10521.1 Feature: domain Description: DUF4133 Location: 55653-55830 bp Feature: domain Description: DUF4133 Location: 55653-55830 bp Feature: gene Location: 55923-56045 bp Ori: KDS10522.1 Feature: domain Description: DUF4134 Location: 55941-56031 bp Feature: domain Description: DUF4134 Location: 55941-56031 bp Feature: gene Location: 56142-57953 bp Ori: KDS10523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56406-57228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56406-572 2 8 bp Feature: domain Description: Intron_maturas2 Location: 57417-57627 bp Feature: domain Description: Intron_maturas2 Location: 57417-5762 7 bp Feature: domain Description: HNHc Note: nucleases Location: 57777-57882 bp Feature: domain Description: HNHc Note: nucleases Location: 57777-57882 bp Feature: gene Location: 58495-58785 bp Ori: KDS10524.1 Feature: domain Description: DUF4134 Location: 58567-58768 bp Feature: domain Description: DUF4134 Location: 58567-58768 bp Feature: gene Location: 58840-59166 bp Ori: KDS10525.1 Feature: domain Description: DUF4134 Location: 58861-59152 bp Feature: domain Description: DUF4134 Location: 58861-59152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JNHF01000109.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.108, whole genome shotgun sequence (14195 bp)
Overview 1 RT 1: 3040-10897 bp Neighborhood of RT #1 [3040, 10897] COG4646 matK RVT-GII Intron_maturas2 N6_Mtase COG4646 Feature: gene Location: 3040-4062 bp Feature: gene Location: 4144-5601 bp Ori: KDS19768.1 Feature: domain Description: COG4646 Location: 4153-5026 bp Feature: domain Description: COG4646 Location: 4153 -5026 bp Feature: gene Location: 5744-7546 bp Ori: KDS19769.1 Feature: domain Description: matK Location: 5813-5900 bp Feature: domain Description: matK Location: 5813 -5900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6008-6830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6008-683 0 bp Feature: domain Description: Intron_maturas2 Location: 6980-7214 bp Feature: domain Description: Intron_maturas2 Location: 6980-7214 bp Feature: gene Location: 8099-10588 bp Ori: KDS19770.1 Feature: domain Description: N6_Mtase Location: 8306-8693 bp Feature: domain Description: N6_Mtase Location: 83 06-8693 bp Feature: domain Description: COG4646 Location: 9716-10577 bp Feature: domain Description: COG4646 Location: 9716-10577 bp Feature: gene Location: 10742-10897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), N6_Mtase (pfam02384)

Seq: JNHF01000009.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.8, whole genome shotgun sequence (100428 bp)
Overview 1 RT 1: 85239-90743 bp Neighborhood of RT #1 [85239, 90784] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 85239-85553 bp Ori: KDS24964.1 Feature: domain Description: DUF3876 Location: 85293-85542 bp Feature: domain Description: DUF3876 Location: 85293-8554 2 bp Feature: gene Location: 85568-87955 bp Ori: KDS24965.1 Feature: domain Description: Bac_Flav_CT_G Location: 85688-87947 bp Feature: domain Description: Bac_Flav_CT_G Location: 85688-8794 7 bp Feature: gene Location: 87936-89612 bp Ori: KDS24966.1 Feature: domain Description: RVT_N Location: 87990-88233 bp Feature: domain Description: RVT_N Location: 87990-88233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88278-88926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88278-88926 bp Feature: domain Description: GIIM Note: maturase Location: 88977-89211 bp Feature: domain Description: GIIM Note: maturase Location: 88977-89211 bp Feature: gene Location: 90219-90464 bp Ori: KDS24967.1 Feature: domain Description: Bac_Flav_CT_G Location: 90222-90447 bp Feature: domain Description: Bac_Flav_CT_G Location: 90222-904 4 7 bp Feature: gene Location: 90461-90784 bp Ori: KDS24968.1 Feature: domain Description: DUF4133 Location: 90476-90743 bp Feature: domain Description: DUF4 133 Location: 904 76-9074 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: JNHF01000002.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.1, whole genome shotgun sequence (75378 bp)
Overview 1 RT 1: 10449-13990 bp Neighborhood of RT #1 [10449, 14004] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 10449-10745 bp Ori: KDS25091.1 Feature: domain Description: DUF4133 Location: 10491-10668 bp Feature: domain Description: DUF4133 Location: 10491-10668 bp Feature: gene Location: 10761-10883 bp Ori: KDS25092.1 Feature: domain Description: DUF4134 Location: 10779-10869 bp Feature: domain Description: DUF4134 Location: 10779-10869 bp Feature: gene Location: 10980-12791 bp Ori: KDS25093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11244-12066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11244-12066 bp Feature: domain Description: Intron_maturas2 Location: 12255-12465 bp Feature: domain Description: Intron_maturas2 Location: 1225 5 -12465 bp Feature: domain Description: HNHc Note: nucleases Location: 12615-12720 bp Feature: domain Description: HNHc Note: nucleases Location: 12615 -12720 bp Feature: gene Location: 13333-13623 bp Ori: KDS25094.1 Feature: domain Description: DUF4134 Location: 13405-13606 bp Feature: domain Description: DUF4134 Location: 13405 -13606 bp Feature: gene Location: 13678-14004 bp Ori: KDS25095.1 Feature: domain Description: DUF4134 Location: 13699-13990 bp Feature: domain Description: DUF4134 Location: 13699-13990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JNHF01000019.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.18, whole genome shotgun sequence (166527 bp)
Overview 1 RT 1: 128836-140091 bp Neighborhood of RT #1 [128836, 140159] DUF1896 N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C PRK13351 Feature: gene Location: 128836-129288 bp Ori: KDS24602.1 Feature: domain Description: DUF1896 Location: 128866-129286 bp Feature: domain Description: DUF1896 Location: 12886 6 -129286 bp Feature: gene Location: 129278-132469 bp Ori: KDS24603.1 Feature: domain Description: N6_Mtase Location: 129836-130193 bp Feature: domain Description: N6 _Mtase Location: 129836 -130193 bp Feature: domain Description: COG4646 Location: 131522-132458 bp Feature: domain Description: COG46 46 Location: 131522-132458 bp Feature: gene Location: 133022-134824 bp Ori: KDS24604.1 Feature: domain Description: matK Location: 133091-133178 bp Feature: domain Description: matK Location: 133091-133178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133286-134108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133286 -134108 bp Feature: domain Description: Intron_maturas2 Location: 134258-134492 bp Feature: domain Description: Intron_maturas2 Location: 134258-134492 bp Feature: gene Location: 134961-137576 bp Ori: KDS24605.1 Feature: domain Description: COG4646 Location: 134970-136065 bp Feature: domain Description: COG46 46 Location: 134970-136 06 5 bp Feature: domain Description: Helicase_C Location: 136278-136476 bp Feature: domain Description: Helicase_C Location: 136 278-136 476 bp Feature: gene Location: 138234-140159 bp Ori: KDS24606.1 Gene: tetM Feature: domain Description: PRK13351 Location: 138237-140091 bp Feature: domain Description: PRK13351 Location: 138237-140091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), PRK13351 (elongation factor G-like protein)

Seq: JNHF01000174.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.173, whole genome shotgun sequence (25034 bp)
Overview 1 RT 1: 10307-13307 bp Neighborhood of RT #1 [10307, 13307] GDPD_like_2 RVT_N RVT-GII Feature: gene Location: 10307-11068 bp Ori: KDS10992.1 Feature: domain Description: GDPD_like_2 Location: 10376-11033 bp Feature: domain Description: GDPD_like_2 Location: 1037 6-11033 bp Feature: gene Location: 11124-11276 bp Feature: gene Location: 12146-12391 bp Ori: KDS10994.1 Feature: domain Description: RVT_N Location: 12149-12242 bp Feature: domain Description: RVT_N Location: 12149-12242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12296-12365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12296-12365 bp Feature: gene Location: 13052-13168 bp Feature: gene Location: 13188-13307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDPD_like_2 (cd08582), RVT_N (pfam13655), RVT-GII

Seq: JNHF01000125.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.124, whole genome shotgun sequence (206370 bp)
Overview 1 RT 1: 31207-41003 bp Neighborhood of RT #1 [31207, 41003] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 31207-31512 bp Feature: gene Location: 31525-38271 bp Ori: KDS17024.1 Feature: domain Description: Laminin_G_3 Location: 32989-33079 bp Feature: domain Description: Laminin_G_3 Location: 3298 9-33079 bp Feature: domain Description: Laminin_G_3 Location: 33727-34150 bp Feature: domain Description: Laminin_G_3 Location: 33727-34150 bp Feature: gene Location: 38794-40098 bp Ori: KDS17025.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39007-39601 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39007-39601 bp Feature: gene Location: 40095-40580 bp Feature: gene Location: 40761-41003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: JNHF01000140.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.139, whole genome shotgun sequence (157560 bp)
Overview 1 RT 1: 126460-132821 bp Neighborhood of RT #1 [126460, 132868] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 126460-127509 bp Feature: gene Location: 127528-127656 bp Feature: gene Location: 127751-129475 bp Ori: KDS14541.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127916-128738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279 16-128738 bp Feature: domain Description: Intron_maturas2 Location: 128912-129164 bp Feature: domain Description: Intron_maturas2 Location: 1289 12-129 164 bp Feature: domain Description: HNHc Note: nucleases Location: 129266-129437 bp Feature: domain Description: HNHc Note: nucleases Location: 129 266-129 437 bp Feature: gene Location: 130143-132539 bp Ori: KDS14542.1 Feature: domain Description: Bac_Flav_CT_G Location: 130146-132528 bp Feature: domain Description: Bac_Flav_CT_G Location: 130146-132528 bp Feature: gene Location: 132536-132868 bp Ori: KDS14543.1 Feature: domain Description: DUF4133 Location: 132554-132821 bp Feature: domain Description: DUF4133 Location: 132554-132821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571)

Seq: JNHF01000163.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.162, whole genome shotgun sequence (262526 bp)
Overview 1 RT 1: 57865-69352 bp Neighborhood of RT #1 [57865, 69468] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 57865-57984 bp Feature: gene Location: 58164-60275 bp Feature: gene Location: 60480-61610 bp Ori: KDS12390.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60801-61344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60801-61344 bp Feature: gene Location: 61612-67569 bp Ori: KDS12391.1 Feature: domain Description: DUF4011 Location: 62842-63355 bp Feature: domain Description: DUF4011 Location: 62842-63355 bp Feature: domain Description: DEXXQc_SF1 Location: 63694-64555 bp Feature: domain Description: DEXXQc_SF1 Location: 63694-64555 bp Feature: domain Description: DEXXQc_SF1 Location: 65122-65881 bp Feature: domain Description: DEXXQc_SF1 Location: 65122-65881 bp Feature: domain Description: TIGR00376 Location: 66013-66400 bp Feature: domain Description: TIGR00376 Location: 66013-66400 bp Feature: domain Description: MTES_1575 Location: 66553-66838 bp Feature: domain Description: MTES_1575 Location: 66553-66838 bp Feature: domain Description: DUF3320 Location: 67078-67219 bp Feature: domain Description: DUF3320 Location: 67078-67219 bp Feature: gene Location: 67666-69468 bp Ori: KDS12392.1 Feature: domain Description: rpsA Location: 67735-69352 bp Feature: domain Description: rpsA Location: 67735-69352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: JNHF01000148.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.147, whole genome shotgun sequence (56481 bp)
Overview 1 RT 1: 9498-12065 bp Neighborhood of RT #1 [9498, 12065] HTH_Hin_like RVT-UG27 Feature: gene Location: 9498-10109 bp Feature: gene Location: 10099-10422 bp Ori: KDS13553.1 Feature: domain Description: HTH_Hin_like Location: 10150-10252 bp Feature: domain Description: HTH_Hin_like Location: 10150-10252 bp Feature: gene Location: 10419-11687 bp Ori: KDS13554.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10608-11244 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10608-11 244 bp Feature: gene Location: 11688-11810 bp Feature: gene Location: 11949-12065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Hin_like (cd00569), RVT-UG27

Seq: JNHF01000167.1 Bacteroides ovatus str. 3725 D1 iv gbf3725D1iv.contig.166, whole genome shotgun sequence (34699 bp)
Overview 1 RT 1: 20441-25387 bp Neighborhood of RT #1 [20441, 25443] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 20441-20713 bp Ori: KDS11440.1 Feature: domain Description: DUF3876 Location: 20468-20699 bp Feature: domain Description: DUF3876 Location: 20468-20699 bp Feature: gene Location: 20720-21322 bp Ori: KDS11441.1 Feature: domain Description: Bac_Flav_CT_G Location: 20837-21296 bp Feature: domain Description: Bac_Flav_CT_G Location: 20837-212 96 bp Feature: gene Location: 21331-22977 bp Ori: KDS11442.1 Feature: domain Description: RVT_N Location: 21385-21628 bp Feature: domain Description: RVT_N Location: 21385-21628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21673-22318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21673-22318 bp Feature: domain Description: GIIM Note: maturase Location: 22372-22603 bp Feature: domain Description: GIIM Note: maturase Location: 22372-22603 bp Feature: gene Location: 23060-23221 bp Feature: gene Location: 23548-25443 bp Ori: KDS11444.1 Feature: domain Description: Bac_Flav_CT_G Location: 23551-25387 bp Feature: domain Description: Bac_Flav_CT_G Location: 23551-25387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)