myRT

myRT report for GCA_000699865.1_ASM69986v1

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Seq: JNHM01000055.1 Bacteroides vulgatus str. 3975 RP4 gbf3975RP4.contig.54, whole genome shotgun sequence (7392 bp)
Overview 1 RT 1: 3365-7391 bp Neighborhood of RT #1 [3365, 7392] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 3365-3688 bp Feature: domain Description: DUF4133 Location: 3380-3647 bp Feature: domain Description: DUF41 33 Location: 3380-3647 bp Feature: gene Location: 3685-3930 bp Feature: domain Description: Bac_Flav_CT_G Location: 3688-3913 bp Feature: domain Description: Bac_Flav_CT_G Location: 3688-391 3 bp Feature: gene Location: 4537-6213 bp Feature: RT Description: RVT_N Location: 4591-4834 bp Feature: RT Description: RVT_N Location: 4591 -4834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4879-5527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4879-5527 bp Feature: domain Description: GIIM Note: maturase Location: 5578-5812 bp Feature: domain Description: GIIM Note: maturase Location: 5578-581 2 bp Feature: gene Location: 6194-7392 bp Feature: domain Description: Bac_Flav_CT_G Location: 6314-7391 bp Feature: domain Description: Bac_Flav_CT_G Location: 631 4-7391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JNHM01000030.1 Bacteroides vulgatus str. 3975 RP4 gbf3975RP4.contig.29, whole genome shotgun sequence (26103 bp)
Overview 1 RT 1: 1-5400 bp Neighborhood of RT #1 [1, 5417] HTH_23 COG4584 RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 HTH_17 HTH_17 HTH_17 Feature: gene Location: 1-628 bp Feature: domain Description: HTH_23 Location: 4-133 bp Feature: domain Description: HTH_2 3 Location: 4-133 bp Feature: domain Description: COG4584 Location: 382-622 bp Feature: domain Description: COG4584 Location: 382 -62 2 bp Feature: gene Location: 881-2179 bp Feature: gene Location: 2314-3363 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2542-3121 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 542 -312 1 bp Feature: gene Location: 3472-4578 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3496-3703 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3496-3703 bp Feature: domain Description: Phage_int_SAM_5 Location: 3760-4027 bp Feature: domain Description: Phage_int_SAM_5 Location: 3760-402 7 bp Feature: domain Description: INTN1_C_like Location: 4087-4546 bp Feature: domain Description: INTN1_C_like Location: 4087-4546 bp Feature: gene Location: 4671-5417 bp Feature: domain Description: HTH_17 Location: 4716-4851 bp Feature: domain Description: HTH_17 Location: 4716-4851 bp Feature: domain Description: HTH_17 Location: 4917-5064 bp Feature: domain Description: HTH_17 Location: 4917-5064 bp Feature: domain Description: HTH_17 Location: 5091-5220 bp Feature: domain Description: HTH_17 Location: 5091-52 2 0 bp Feature: domain Description: HTH_17 Location: 5259-5400 bp Feature: domain Description: HTH_17 Location: 52 59-5400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), COG4584 (Transposase ), RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: JNHM01000164.1 Bacteroides vulgatus str. 3975 RP4 gbf3975RP4.contig.163, whole genome shotgun sequence (75476 bp)
Overview 1 RT 1: 65146-73807 bp Neighborhood of RT #1 [65146, 73812] Response_reg RVT-Retrons HelD UvrD UvrD Feature: gene Location: 65146-67368 bp Feature: domain Description: Response_reg Location: 66466-66703 bp Feature: domain Description: Response_reg Location: 66466-66703 bp Feature: gene Location: 67373-68458 bp Feature: gene Location: 68535-70262 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68715-69309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68715-693 09 bp Feature: gene Location: 70783-72504 bp Feature: gene Location: 72508-73812 bp Feature: domain Description: HelD Location: 72550-72640 bp Feature: domain Description: HelD Location: 72550-72640 bp Feature: domain Description: UvrD Location: 73012-73543 bp Feature: domain Description: UvrD Location: 73 012-73 543 bp Feature: domain Description: UvrD Location: 73609-73807 bp Feature: domain Description: UvrD Location: 73 609-73 807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Response_reg (pfam00072), RVT-Retrons, HelD (COG3973), UvrD (COG0210)