myRT

myRT report for GCA_000700465.1_ASM70046v1

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Seq: JNMS01000004.1 (265301 bp)
Overview 1 RT 1: 58-3728 bp Neighborhood of RT #1 [58, 3730] PHA02517 RVT-GII GIIM PHA02517 PRK09692 Feature: gene Location: 58-270 bp Feature: domain Description: PHA02517 Location: 61-205 bp Feature: domain Description: PHA0251 7 Location: 61 -205 bp Feature: gene Location: 877-2385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 35-1 867 bp Feature: domain Description: GIIM Note: maturase Location: 1942-2140 bp Feature: domain Description: GIIM Note: maturase Location: 1 942-21 40 bp Feature: gene Location: 2577-2948 bp Feature: domain Description: PHA02517 Location: 2580-2946 bp Feature: domain Description: PHA0251 7 Location: 2580-2946 bp Feature: gene Location: 3179-3730 bp Feature: domain Description: PRK09692 Location: 3185-3728 bp Feature: domain Description: PRK09692 Location: 31 85-3728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), PRK09692 (Integrase; provisional), RVT-GII, GIIM (pfam08388)

Seq: JNMS01000050.1 (19088 bp)
Overview 1 RT 1: 12056-15898 bp Neighborhood of RT #1 [12056, 15909] DDE_Tnp_IS66_C RVT-GII DDE_Tnp_IS66 PRK14702 Feature: gene Location: 12056-12733 bp Feature: gene Location: 12988-13137 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13003-13114 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13003-13114 bp Feature: gene Location: 13874-14377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13970-14375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13970-14375 bp Feature: gene Location: 14944-15318 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14956-15277 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14956-152 77 bp Feature: gene Location: 15556-15909 bp Feature: domain Description: PRK14702 Location: 15559-15898 bp Feature: domain Description: PRK14702 Location: 15559-15898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, DDE_Tnp_IS66 (pfam03050), PRK14702 (insertion element IS2 transposase InsD; Provisional)

Seq: JNMS01000092.1 (4087 bp)
Overview 1 RT 1: 1-3275 bp Neighborhood of RT #1 [1, 3370] Spo0J PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-600 bp Feature: domain Description: Spo0J Location: 109-601 bp Feature: domain Description: Spo0J Location: 109-601 bp Feature: gene Location: 948-1388 bp Feature: domain Description: PRK13732 Location: 951-1386 bp Feature: domain Description: PRK13 73 2 Location: 951-13 86 bp Feature: gene Location: 1583-3370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1736-2567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173 6-2567 bp Feature: domain Description: Intron_maturas2 Location: 2681-2939 bp Feature: domain Description: Intron_maturas2 Location: 2681-293 9 bp Feature: domain Description: HNHc Note: nucleases Location: 3113-3275 bp Feature: domain Description: HNHc Note: nucleases Location: 3 113 -3 275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spo0J (COG1475), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: JNMS01000081.1 (5343 bp)
Overview 1 RT 1: 1-3321 bp Neighborhood of RT #1 [1, 3323] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-262 bp Feature: domain Description: PHA02517 Location: 4-262 bp Feature: domain Description: PHA02517 Location: 4 -262 bp Feature: gene Location: 454-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712-14 4 4 bp Feature: domain Description: GIIM Note: maturase Location: 1519-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1519-1717 bp Feature: gene Location: 2569-3048 bp Feature: domain Description: PHA02517 Location: 2629-2983 bp Feature: domain Description: PHA02517 Location: 2629-2983 bp Feature: gene Location: 3048-3323 bp Feature: domain Description: InsE Location: 3069-3321 bp Feature: domain Description: InsE Location: 3069-3321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)