myRT

myRT report for GCA_000701105.2_ASM70110v2

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Seq: JFBE01000026.1 (116832 bp)
Overview 1 RT 1: 4420-9533 bp Neighborhood of RT #1 [4420, 9595] RVT-Retrons TIR_2 PRK15011 2A78 Feature: gene Location: 4420-6027 bp Ori: KDV16441.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4711-5308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 471 1 -5308 bp Feature: domain Description: TIR_2 Location: 5632-5989 bp Feature: domain Description: TIR_2 Location: 5632-5989 bp Feature: gene Location: 7377-8561 bp Ori: KDV16442.1 Feature: domain Description: PRK15011 Location: 7386-8559 bp Feature: domain Description: PRK1 501 1 Location: 7386-8559 bp Feature: gene Location: 8672-9595 bp Ori: KDV16443.1 Feature: domain Description: 2A78 Location: 8726-9533 bp Feature: domain Description: 2A78 Location: 8726-9533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK15011 (sugar efflux transporter SetB), 2A78 (TIGR00950)

Seq: JFBE01000068.1 (2226 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-387 bp Feature: gene Location: 672-2180 bp Ori: KDV13541.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JFBE01000057.1 (29368 bp)
Overview 1 RT 1: 21433-27896 bp Neighborhood of RT #1 [21433, 28894] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG3 RVT-UG8 Feature: gene Location: 21433-24000 bp Ori: KDV13892.1 Feature: domain Description: mutS1 Location: 21469-23989 bp Feature: domain Description: mutS1 Location: 21469-23 989 bp Feature: gene Location: 24160-25620 bp Ori: KDV13893.1 Feature: domain Description: INT_Rci_Hp1_C Location: 24535-24742 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2453 5-24742 bp Feature: domain Description: INT_P4_C Location: 24961-25498 bp Feature: domain Description: INT_P4_C Location: 24961-25498 bp Feature: gene Location: 25617-26879 bp Ori: KDV13894.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 25899-26394 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 25899-263 94 bp Feature: gene Location: 26876-28894 bp Ori: KDV13895.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 27446-27896 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 27446-27896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3, RVT-UG8