myRT

myRT report for GCA_000702485.1_ASM70248v1

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Seq: JNIL01000001.1 Alicyclobacillus macrosporangiidus CPP55 N687DRAFT_scf7180000000004_quiver_dupTrim_3167.1_C, whole genome shotgun sequence (4073483 bp)
Overview 1 RT 1: 1081584-1085928 bp 2 RT 2: 2684050-2691692 bp 3 RT 3: 3006371-3011264 bp 4 RT 4: 3618527-3625105 bp 5 RT 5: 3828838-3834885 bp Neighborhood of RT #1 [1081584, 1085963] MhpD MhpD RVT-GII GIIM YphP_YqiW hemE Neighborhood of RT #2 [2684050, 2691703] COG3547 COG3547 DEDD_Tnp_IS110 Transposase_20 RVT-GII RVT-GII Wzy_C TPR TPR TPR Neighborhood of RT #3 [3006371, 3011362] PRK05428 NlpD RVT-GII GIIM KOG0553 Neighborhood of RT #4 [3618527, 3625105] PRK05286 PotE RVT-GII GIIM PRK09415 Neighborhood of RT #5 [3828838, 3835001] ParAB_family SAF_CpaB_FlgA_like RVT-GII GIIM heli_sec_ATPase T2SSF Feature: gene Location: 1081584-1081862 bp Feature: domain Description: MhpD Location: 1081635-1081854 bp Feature: domain Description: MhpD Location: 1 081 635-1 081 854 bp Feature: gene Location: 1081940-1082251 bp Feature: domain Description: MhpD Location: 1081979-1082186 bp Feature: domain Description: MhpD Location: 1 081 979-1 0821 86 bp Feature: gene Location: 1082392-1083804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082746-1083364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 082746-1 083364 bp Feature: domain Description: GIIM Note: maturase Location: 1083415-1083640 bp Feature: domain Description: GIIM Note: maturase Location: 1 08341 5-1 083640 bp Feature: gene Location: 1084249-1084677 bp Feature: domain Description: YphP_YqiW Location: 1084273-1084675 bp Feature: domain Description: YphP_YqiW Location: 1 084273-1 084675 bp Feature: gene Location: 1084902-1085963 bp Feature: domain Description: hemE Location: 1084911-1085928 bp Feature: domain Description: hemE Location: 1 08491 1 -1 085928 bp Feature: gene Location: 2684050-2685009 bp Feature: domain Description: COG3547 Location: 2684107-2684398 bp Feature: domain Description: COG3547 Location: 26841 07-2684398 bp Feature: domain Description: COG3547 Location: 2684500-2684917 bp Feature: domain Description: COG3547 Location: 2684500-268491 7 bp Feature: gene Location: 2685572-2686747 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2685584-2686055 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2685584-2686055 bp Feature: domain Description: Transposase_20 Location: 2686376-2686631 bp Feature: domain Description: Transposase_20 Location: 2686376-2686631 bp Feature: gene Location: 2687272-2688204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2687626-2687755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2687626-2687755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2687845-2688082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2687845-2688082 bp Feature: gene Location: 2688400-2690931 bp Feature: domain Description: Wzy_C Location: 2689042-2689636 bp Feature: domain Description: Wzy_C Location: 2689042-2689636 bp Feature: domain Description: TPR Location: 2690335-2690602 bp Feature: domain Description: TPR Location: 2690335-2690602 bp Feature: gene Location: 2691119-2691703 bp Feature: domain Description: TPR Location: 2691317-2691488 bp Feature: domain Description: TPR Location: 2691 31 7-2691 488 bp Feature: domain Description: TPR Location: 2691497-2691692 bp Feature: domain Description: TPR Location: 2691 497-2691 692 bp Feature: gene Location: 3006371-3007315 bp Feature: domain Description: PRK05428 Location: 3006389-3007301 bp Feature: domain Description: PRK05428 Location: 3006389-3007301 bp Feature: gene Location: 3007439-3008812 bp Feature: domain Description: NlpD Location: 3008225-3008807 bp Feature: domain Description: NlpD Location: 3008225-3008807 bp Feature: gene Location: 3009257-3010669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3009611-3010229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300961 1 -301 0229 bp Feature: domain Description: GIIM Note: maturase Location: 3010280-3010505 bp Feature: domain Description: GIIM Note: maturase Location: 301 0280-301 0505 bp Feature: gene Location: 3010717-3010866 bp Feature: gene Location: 3010910-3011362 bp Feature: domain Description: KOG0553 Location: 3011003-3011264 bp Feature: domain Description: KOG0553 Location: 301 1 003-301 1 264 bp Feature: gene Location: 3618527-3619726 bp Feature: domain Description: PRK05286 Location: 3618656-3619676 bp Feature: domain Description: PRK05286 Location: 361 8656-361 9676 bp Feature: gene Location: 3619910-3621517 bp Feature: domain Description: PotE Location: 3619913-3621368 bp Feature: domain Description: PotE Location: 361 991 3-3621 368 bp Feature: gene Location: 3622005-3623588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3622359-3622977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3622359-3622977 bp Feature: domain Description: GIIM Note: maturase Location: 3623028-3623253 bp Feature: domain Description: GIIM Note: maturase Location: 3623028-3623253 bp Feature: gene Location: 3623590-3624144 bp Feature: domain Description: PRK09415 Location: 3623632-3624121 bp Feature: domain Description: PRK0941 5 Location: 3623632-36241 21 bp Feature: gene Location: 3624131-3625105 bp Feature: gene Location: 3828838-3830019 bp Feature: domain Description: ParAB_family Location: 3829279-3829798 bp Feature: domain Description: ParAB_family Location: 3829279-3829798 bp Feature: gene Location: 3830016-3830741 bp Feature: domain Description: SAF_CpaB_FlgA_like Location: 3830115-3830298 bp Feature: domain Description: SAF_CpaB_FlgA_like Location: 38301 1 5-3830298 bp Feature: gene Location: 3831192-3832604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3831546-3832164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3831 546-38321 64 bp Feature: domain Description: GIIM Note: maturase Location: 3832215-3832440 bp Feature: domain Description: GIIM Note: maturase Location: 383221 5-3832440 bp Feature: gene Location: 3832716-3834089 bp Feature: domain Description: heli_sec_ATPase Location: 3832953-3833793 bp Feature: domain Description: heli_sec_ATPase Location: 3832953-3833793 bp Feature: gene Location: 3834120-3835001 bp Feature: domain Description: T2SSF Location: 3834522-3834885 bp Feature: domain Description: T2SSF Location: 3834522-3834885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MhpD (COG3971), RVT-GII, GIIM (pfam08388), YphP_YqiW (TIGR04191), hemE (TIGR01464), COG3547 (Transposase ), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), Wzy_C (pfam04932), TPR (smart00028)
PRK05428 (HPr kinase/phosphorylase; Provisional), NlpD (COG0739), KOG0553 (KOG0553, TPR repeat-containing protein ), PRK05286 (quinone-dependent dihydroorotate dehydrogenase), PotE (COG0531), PRK09415 (RNA polymerase factor sigma C; Reviewed), ParAB_family (cd02042), SAF_CpaB_FlgA_like (cd11614), heli_sec_ATPase (TIGR03819), T2SSF (pfam00482)