myRT

myRT report for GCA_000702545.1_ASM70254v1

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Seq: JNIO01000008.1 Selenomonas ruminantium AB3002 P159DRAFT_scf7180000000016_quiver.8_C, whole genome shotgun sequence (2141647 bp)
Overview 1 RT 1: 5852-10069 bp 2 RT 2: 45751-49970 bp 3 RT 3: 1512184-1517995 bp Neighborhood of RT #1 [5852, 10128] pfam03781 Avd_like RVT-DGRs Phage_holin_4_1 PGRP Neighborhood of RT #2 [45751, 50029] pfam03781 Avd_like RVT-DGRs Phage_holin_4_1 PGRP Neighborhood of RT #3 [1512184, 1517997] COG3680 RVT-GII GIIM HycG PRK11742 HycE2 Feature: gene Location: 5852-7186 bp Feature: domain Description: pfam03781 Location: 6089-6428 bp Feature: domain Description: pfam03781 Location: 6089-6428 bp Feature: gene Location: 7319-7693 bp Feature: domain Description: Avd_like Location: 7376-7682 bp Feature: domain Description: Avd_like Location: 7376-7682 bp Feature: gene Location: 8015-9064 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8225-8891 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8225-8891 bp Feature: gene Location: 9066-9500 bp Feature: domain Description: Phage_holin_4_1 Location: 9147-9480 bp Feature: domain Description: Phage_holin_4_1 Location: 91 47-9480 bp Feature: gene Location: 9634-10128 bp Feature: domain Description: PGRP Location: 9706-10069 bp Feature: domain Description: PGRP Location: 9706-1 0069 bp Feature: gene Location: 45751-47151 bp Feature: domain Description: pfam03781 Location: 45991-46327 bp Feature: domain Description: pfam03781 Location: 45991 -46327 bp Feature: gene Location: 47219-47593 bp Feature: domain Description: Avd_like Location: 47276-47582 bp Feature: domain Description: Avd_like Location: 47276-47582 bp Feature: gene Location: 47916-48965 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48126-48792 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 481 26-48792 bp Feature: gene Location: 48967-49401 bp Feature: domain Description: Phage_holin_4_1 Location: 49048-49381 bp Feature: domain Description: Phage_holin_4_1 Location: 49048-49381 bp Feature: gene Location: 49535-50029 bp Feature: domain Description: PGRP Location: 49607-49970 bp Feature: domain Description: PGRP Location: 49607-49970 bp Feature: gene Location: 1512184-1513023 bp Feature: gene Location: 1513044-1513805 bp Feature: domain Description: COG3680 Location: 1513050-1513746 bp Feature: domain Description: COG3680 Location: 1 51 3050-1 51 3746 bp Feature: gene Location: 1514072-1515484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1514423-1515041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 4423-1 51 5041 bp Feature: domain Description: GIIM Note: maturase Location: 1515098-1515329 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 5098-1 51 5329 bp Feature: gene Location: 1515948-1516484 bp Feature: domain Description: HycG Location: 1516077-1516476 bp Feature: domain Description: HycG Location: 1 51 6077-1 51 6476 bp Feature: gene Location: 1516495-1517997 bp Feature: domain Description: PRK11742 Location: 1516687-1516864 bp Feature: domain Description: PRK1 1 742 Location: 1 51 6687-1 51 6864 bp Feature: domain Description: HycE2 Location: 1516912-1517995 bp Feature: domain Description: HycE2 Location: 1 51 691 2-1 51 7995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), PGRP (smart00701), COG3680 (Uncharacterized protein ), RVT-GII, GIIM (pfam08388), HycG (COG3260), PRK11742 (bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional)
HycE2 (COG3261)