myRT

myRT report for GCA_000702945.1_ASM70294v1

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Seq: JNLE01000003.1 Clostridium sp. KNHs205 BR73DRAFT_scf7180000000014_quiver.3_C, whole genome shotgun sequence (4697956 bp)
Overview 1 RT 1: 1-5734 bp 2 RT 2: 123773-128805 bp 3 RT 3: 670968-676804 bp 4 RT 4: 783422-787975 bp 5 RT 5: 854525-859295 bp 6 RT 6: 872298-882434 bp 7 RT 7: 1021887-1025436 bp 8 RT 8: 1961371-1968732 bp 9 RT 9: 2112102-2118294 bp 10 RT 10: 2143666-2148166 bp 11 RT 11: 2214418-2218144 bp 12 RT 12: 3347984-3353862 bp 13 RT 13: 3527962-3536500 bp 14 RT 14: 3690897-3697844 bp 15 RT 15: 4150870-4156436 bp Neighborhood of RT #1 [1, 5754] Big_8 GIIM RVT-GII RVT-GII RVT-GII GIIM group_II_RT_mat SAPR Neighborhood of RT #2 [123773, 128810] PPC PPC RVT-GII GIIM PRK06701 Neighborhood of RT #3 [670968, 676821] LivG LivF RVT-GII GIIM BaFpgNei_N_3 H2TH fabG Neighborhood of RT #4 [783422, 787980] RVT-GII GIIM PRK09414 Neighborhood of RT #5 [854525, 859705] AzgA RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #6 [872298, 882592] rplL RVT-GII GIIM rpoB rpoB PRK00566 Neighborhood of RT #7 [1021887, 1025441] ddl ddl RVT-GII GIIM YjfB_motility Neighborhood of RT #8 [1961371, 1968848] DltB AraC RVT-GII GIIM PRK10150 DHHW DHHW Neighborhood of RT #9 [2112102, 2118371] DUF3991 Toprim_2 VirD4 RVT-GII HNHc VirD4 HTH_36 Neighborhood of RT #10 [2143666, 2148166] SLH SLH SLH PRK06934 RVT-GII GIIM sigma70-ECF Neighborhood of RT #11 [2214418, 2218144] TrkA TrkA_C RVT-GII GIIM Neighborhood of RT #12 [3347984, 3353873] Acetyltransf_1 Acetyltransf_1 RVT-GII GIIM MurNAc-LAA SPOR Peptidases_S8_CspA-like Neighborhood of RT #13 [3527962, 3536607] CE4_GLA_like_6s RVT-GII GIIM CBM35_mannanase-like Glyco_hydro_26 CBM_SBP_bac_1_like GH115_C CBM_SBP_bac_1_like PBP2_TMBP_like Neighborhood of RT #14 [3690897, 3697844] PRK05912 GH43_BT3675-like GH43_BT3675-like RVT-GII GIIM ECF_S_folT_fam Neighborhood of RT #15 [4150870, 4156477] adh_short RVT-GII GIIM BaeS Feature: gene Location: 1-486 bp Feature: domain Description: Big_8 Location: 175-466 bp Feature: domain Description: Big_8 Location: 1 75-466 bp Feature: gene Location: 805-1224 bp Feature: domain Description: GIIM Note: maturase Location: 835-1063 bp Feature: domain Description: GIIM Note: maturase Location: 835-1 063 bp Feature: gene Location: 1194-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1197-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 97-1 449 bp Feature: gene Location: 1609-1986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1732-1957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 732-1 957 bp Feature: gene Location: 1958-2215 bp Feature: gene Location: 2228-2389 bp Feature: gene Location: 2797-3711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2815-3256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 5-3256 bp Feature: domain Description: GIIM Note: maturase Location: 3316-3535 bp Feature: domain Description: GIIM Note: maturase Location: 331 6-3535 bp Feature: gene Location: 3882-4112 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3957-4104 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3957-41 04 bp Feature: gene Location: 4636-5754 bp Feature: domain Description: SAPR Location: 4639-5734 bp Feature: domain Description: SAPR Location: 4639-5734 bp Feature: gene Location: 123773-124918 bp Feature: domain Description: PPC Location: 124331-124514 bp Feature: domain Description: PPC Location: 1 24331 -1 2451 4 bp Feature: domain Description: PPC Location: 124655-124871 bp Feature: domain Description: PPC Location: 1 24655-1 24871 bp Feature: gene Location: 124952-125161 bp Feature: gene Location: 125396-126712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125642-126257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25642-1 26257 bp Feature: domain Description: GIIM Note: maturase Location: 126317-126536 bp Feature: domain Description: GIIM Note: maturase Location: 1 2631 7-1 26536 bp Feature: gene Location: 127597-127761 bp Feature: gene Location: 127791-128810 bp Feature: domain Description: PRK06701 Location: 127968-128805 bp Feature: domain Description: PRK06701 Location: 1 27968-1 28805 bp Feature: gene Location: 670968-672023 bp Feature: domain Description: LivG Location: 670977-671730 bp Feature: domain Description: LivG Location: 670977-671 730 bp Feature: gene Location: 672031-672735 bp Feature: domain Description: LivF Location: 672034-672730 bp Feature: domain Description: LivF Location: 672034-672730 bp Feature: gene Location: 673255-674571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673501-674116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673501 -6741 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 674176-674395 bp Feature: domain Description: GIIM Note: maturase Location: 6741 76-674395 bp Feature: gene Location: 674819-675688 bp Feature: domain Description: BaFpgNei_N_3 Location: 674825-675173 bp Feature: domain Description: BaFpgNei_N_3 Location: 674825-6751 73 bp Feature: domain Description: H2TH Location: 675227-675485 bp Feature: domain Description: H2TH Location: 675227-675485 bp Feature: gene Location: 676024-676821 bp Feature: domain Description: fabG Location: 676072-676804 bp Feature: domain Description: fabG Location: 676072-676804 bp Feature: gene Location: 783422-783979 bp Feature: gene Location: 784185-784418 bp Feature: gene Location: 784497-785909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784848-785469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784848-785469 bp Feature: domain Description: GIIM Note: maturase Location: 785523-785748 bp Feature: domain Description: GIIM Note: maturase Location: 785523-785748 bp Feature: gene Location: 786261-786395 bp Feature: gene Location: 786646-787980 bp Feature: domain Description: PRK09414 Location: 786652-787975 bp Feature: domain Description: PRK0941 4 Location: 786652-787975 bp Feature: gene Location: 854525-855946 bp Feature: domain Description: AzgA Location: 854528-855932 bp Feature: domain Description: AzgA Location: 854528-855932 bp Feature: gene Location: 856119-856352 bp Feature: gene Location: 856431-857843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856782-857403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856782-857403 bp Feature: domain Description: GIIM Note: maturase Location: 857457-857682 bp Feature: domain Description: GIIM Note: maturase Location: 857457-857682 bp Feature: gene Location: 858075-858242 bp Feature: gene Location: 858296-859705 bp Feature: domain Description: Resolvase Location: 858302-858686 bp Feature: domain Description: Resolvase Location: 858302-858686 bp Feature: domain Description: Recombinase Location: 858752-859073 bp Feature: domain Description: Recombinase Location: 858752-859073 bp Feature: domain Description: Zn_ribbon_recom Location: 859121-859295 bp Feature: domain Description: Zn_ribbon_recom Location: 8591 21 -859295 bp Feature: gene Location: 872298-872663 bp Feature: domain Description: rplL Location: 872301-872661 bp Feature: domain Description: rplL Location: 872301 -872661 bp Feature: gene Location: 872807-873040 bp Feature: gene Location: 873119-874531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873470-874091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873470-874091 bp Feature: domain Description: GIIM Note: maturase Location: 874145-874370 bp Feature: domain Description: GIIM Note: maturase Location: 8741 45-874370 bp Feature: gene Location: 874974-878807 bp Feature: domain Description: rpoB Location: 875019-875628 bp Feature: domain Description: rpoB Location: 87501 9-875628 bp Feature: domain Description: rpoB Location: 875634-878598 bp Feature: domain Description: rpoB Location: 875634-878598 bp Feature: gene Location: 878864-882592 bp Feature: domain Description: PRK00566 Location: 878903-882434 bp Feature: domain Description: PRK00566 Location: 878903-882434 bp Feature: gene Location: 1021887-1022942 bp Feature: domain Description: ddl Location: 1021890-1022019 bp Feature: domain Description: ddl Location: 1 021 890-1 02201 9 bp Feature: domain Description: ddl Location: 1022187-1022922 bp Feature: domain Description: ddl Location: 1 0221 87-1 022922 bp Feature: gene Location: 1022957-1023115 bp Feature: gene Location: 1023256-1024668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023607-1024228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 023607-1 024228 bp Feature: domain Description: GIIM Note: maturase Location: 1024282-1024507 bp Feature: domain Description: GIIM Note: maturase Location: 1 024282-1 024507 bp Feature: gene Location: 1024747-1024980 bp Feature: gene Location: 1025136-1025441 bp Feature: domain Description: YjfB_motility Location: 1025274-1025436 bp Feature: domain Description: YjfB_motility Location: 1 025274-1 025436 bp Feature: gene Location: 1961371-1962774 bp Feature: domain Description: DltB Location: 1961380-1962544 bp Feature: domain Description: DltB Location: 1 961 380-1 962544 bp Feature: gene Location: 1962862-1963440 bp Feature: domain Description: AraC Location: 1963120-1963429 bp Feature: domain Description: AraC Location: 1 9631 20-1 963429 bp Feature: gene Location: 1963868-1965184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1964114-1964729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9641 1 4-1 964729 bp Feature: domain Description: GIIM Note: maturase Location: 1964789-1965008 bp Feature: domain Description: GIIM Note: maturase Location: 1 964789-1 965008 bp Feature: gene Location: 1965678-1967354 bp Feature: domain Description: PRK10150 Location: 1965723-1967340 bp Feature: domain Description: PRK1 01 50 Location: 1 965723-1 967340 bp Feature: gene Location: 1967742-1968848 bp Feature: domain Description: DHHW Location: 1967853-1967982 bp Feature: domain Description: DHHW Location: 1 967853-1 967982 bp Feature: domain Description: DHHW Location: 1968150-1968732 bp Feature: domain Description: DHHW Location: 1 9681 50-1 968732 bp Feature: gene Location: 2112102-2113541 bp Feature: domain Description: DUF3991 Location: 2112459-2112684 bp Feature: domain Description: DUF3991 Location: 21 1 2459-21 1 2684 bp Feature: domain Description: Toprim_2 Location: 2112699-2112987 bp Feature: domain Description: Toprim_2 Location: 21 1 2699-21 1 2987 bp Feature: gene Location: 2113549-2114913 bp Feature: domain Description: VirD4 Location: 2113684-2114896 bp Feature: domain Description: VirD4 Location: 21 1 3684-21 1 4896 bp Feature: gene Location: 2115622-2117496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2115937-2116660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 5937-21 1 6660 bp Feature: domain Description: HNHc Note: nucleases Location: 2117224-2117368 bp Feature: domain Description: HNHc Note: nucleases Location: 21 1 7224-21 1 7368 bp Feature: gene Location: 2117627-2118097 bp Feature: domain Description: VirD4 Location: 2117648-2118002 bp Feature: domain Description: VirD4 Location: 21 1 7648-21 1 8002 bp Feature: gene Location: 2118102-2118371 bp Feature: domain Description: HTH_36 Location: 2118132-2118294 bp Feature: domain Description: HTH_36 Location: 21 1 81 32-21 1 8294 bp Feature: gene Location: 2143666-2144862 bp Feature: domain Description: SLH Location: 2143765-2143882 bp Feature: domain Description: SLH Location: 21 43765-21 43882 bp Feature: domain Description: SLH Location: 2143942-2144071 bp Feature: domain Description: SLH Location: 21 43942-21 44071 bp Feature: domain Description: SLH Location: 2144125-2144257 bp Feature: domain Description: SLH Location: 21 441 25-21 44257 bp Feature: domain Description: PRK06934 Location: 2144287-2144845 bp Feature: domain Description: PRK06934 Location: 21 44287-21 44845 bp Feature: gene Location: 2145503-2145736 bp Feature: gene Location: 2145815-2147227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2146166-2146787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 461 66-21 46787 bp Feature: domain Description: GIIM Note: maturase Location: 2146841-2147066 bp Feature: domain Description: GIIM Note: maturase Location: 21 46841 -21 47066 bp Feature: gene Location: 2147445-2147909 bp Feature: domain Description: sigma70-ECF Location: 2147487-2147898 bp Feature: domain Description: sigma70-ECF Location: 21 47487-21 47898 bp Feature: gene Location: 2147984-2148166 bp Feature: gene Location: 2214418-2214795 bp Feature: domain Description: TrkA Location: 2214460-2214703 bp Feature: domain Description: TrkA Location: 221 4460-221 4703 bp Feature: gene Location: 2214802-2214975 bp Feature: domain Description: TrkA_C Location: 2214811-2214949 bp Feature: domain Description: TrkA_C Location: 221 481 1 -221 4949 bp Feature: gene Location: 2215692-2217008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2215938-2216553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 5938-221 6553 bp Feature: domain Description: GIIM Note: maturase Location: 2216613-2216832 bp Feature: domain Description: GIIM Note: maturase Location: 221 661 3-221 6832 bp Feature: gene Location: 2217326-2217700 bp Feature: gene Location: 2217959-2218144 bp Feature: gene Location: 3347984-3348850 bp Feature: domain Description: Acetyltransf_1 Location: 3348158-3348320 bp Feature: domain Description: Acetyltransf_1 Location: 33481 58-3348320 bp Feature: domain Description: Acetyltransf_1 Location: 3348515-3348809 bp Feature: domain Description: Acetyltransf_1 Location: 334851 5-3348809 bp Feature: gene Location: 3348977-3349210 bp Feature: gene Location: 3349289-3350701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349640-3350261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349640-3350261 bp Feature: domain Description: GIIM Note: maturase Location: 3350315-3350540 bp Feature: domain Description: GIIM Note: maturase Location: 335031 5-3350540 bp Feature: gene Location: 3350928-3352010 bp Feature: domain Description: MurNAc-LAA Location: 3350940-3351441 bp Feature: domain Description: MurNAc-LAA Location: 3350940-3351 441 bp Feature: domain Description: SPOR Location: 3351792-3351993 bp Feature: domain Description: SPOR Location: 3351 792-3351 993 bp Feature: gene Location: 3352212-3353873 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 3352494-3353862 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 3352494-3353862 bp Feature: gene Location: 3527962-3528792 bp Feature: domain Description: CE4_GLA_like_6s Location: 3528037-3528604 bp Feature: domain Description: CE4_GLA_like_6s Location: 3528037-3528604 bp Feature: gene Location: 3529002-3529235 bp Feature: gene Location: 3529314-3530726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3529665-3530286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3529665-3530286 bp Feature: domain Description: GIIM Note: maturase Location: 3530340-3530565 bp Feature: domain Description: GIIM Note: maturase Location: 3530340-3530565 bp Feature: gene Location: 3532009-3533577 bp Feature: domain Description: CBM35_mannanase-like Location: 3532171-3532525 bp Feature: domain Description: CBM35_mannanase-like Location: 35321 71 -3532525 bp Feature: domain Description: Glyco_hydro_26 Location: 3532582-3533515 bp Feature: domain Description: Glyco_hydro_26 Location: 3532582-353351 5 bp Feature: gene Location: 3533638-3536607 bp Feature: domain Description: CBM_SBP_bac_1_like Location: 3533863-3534103 bp Feature: domain Description: CBM_SBP_bac_1 _like Location: 3533863-35341 03 bp Feature: domain Description: GH115_C Location: 3534139-3534382 bp Feature: domain Description: GH1 1 5_C Location: 35341 39-3534382 bp Feature: domain Description: CBM_SBP_bac_1_like Location: 3534436-3534880 bp Feature: domain Description: CBM_SBP_bac_1 _like Location: 3534436-3534880 bp Feature: domain Description: PBP2_TMBP_like Location: 3535384-3536500 bp Feature: domain Description: PBP2_TMBP_like Location: 3535384-3536500 bp Feature: gene Location: 3690897-3692132 bp Feature: domain Description: PRK05912 Location: 3690903-3692121 bp Feature: domain Description: PRK0591 2 Location: 3690903-36921 21 bp Feature: gene Location: 3692645-3694456 bp Feature: domain Description: GH43_BT3675-like Location: 3692810-3693206 bp Feature: domain Description: GH43_BT3675-like Location: 369281 0-3693206 bp Feature: domain Description: GH43_BT3675-like Location: 3693593-3694442 bp Feature: domain Description: GH43_BT3675-like Location: 3693593-3694442 bp Feature: gene Location: 3694980-3696296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3695226-3695841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3695226-3695841 bp Feature: domain Description: GIIM Note: maturase Location: 3695901-3696117 bp Feature: domain Description: GIIM Note: maturase Location: 3695901 -36961 1 7 bp Feature: gene Location: 3696411-3696965 bp Feature: domain Description: ECF_S_folT_fam Location: 3696462-3696924 bp Feature: domain Description: ECF_S_folT_fam Location: 3696462-3696924 bp Feature: gene Location: 3697455-3697844 bp Feature: gene Location: 4150870-4151670 bp Feature: domain Description: adh_short Location: 4150888-4151461 bp Feature: domain Description: adh_short Location: 41 50888-41 51 461 bp Feature: gene Location: 4152127-4152657 bp Feature: gene Location: 4153034-4154350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4153280-4153895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 53280-41 53895 bp Feature: domain Description: GIIM Note: maturase Location: 4153955-4154174 bp Feature: domain Description: GIIM Note: maturase Location: 41 53955-41 541 74 bp Feature: gene Location: 4154841-4155410 bp Feature: gene Location: 4155407-4156477 bp Feature: domain Description: BaeS Location: 4155569-4156436 bp Feature: domain Description: BaeS Location: 41 55569-41 56436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_8 (pfam17961), GIIM (pfam08388), RVT-GII, group_II_RT_mat (TIGR04416), SAPR (COG3947), PPC (pfam04151), PRK06701 (short chain dehydrogenase; Provisional), LivG (COG0411), LivF (COG0410), BaFpgNei_N_3 (cd08975)
H2TH (pfam06831), fabG (PRK12825), PRK09414 (NADP-specific glutamate dehydrogenase), AzgA (COG2252), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), rplL (PRK00157), rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional)
ddl (PRK01966), YjfB_motility (pfam14070), DltB (COG1696), AraC (COG2207), PRK10150 (beta-D-glucuronidase; Provisional), DHHW (pfam14286), DUF3991 (pfam13154), Toprim_2 (pfam13155), VirD4 (COG3505), HNHc (smart00507)
HTH_36 (pfam13730), SLH (pfam00395), PRK06934 (flavodoxin; Provisional), sigma70-ECF (TIGR02937), TrkA (COG0569), TrkA_C (pfam02080), Acetyltransf_1 (pfam00583), MurNAc-LAA (cl02713), SPOR (pfam05036), Peptidases_S8_CspA-like (cd07478)
CE4_GLA_like_6s (cd10967), CBM35_mannanase-like (cd04086), Glyco_hydro_26 (pfam02156), CBM_SBP_bac_1_like (cd14489), GH115_C (pfam17829), PBP2_TMBP_like (cd13585), PRK05912 (tyrosyl-tRNA synthetase; Validated), GH43_BT3675-like (cd18828), ECF_S_folT_fam (TIGR04518), adh_short (pfam00106)
BaeS (COG0642)

Seq: JNLE01000004.1 Clostridium sp. KNHs205 BR73DRAFT_scf7180000000012_quiver.4_C, whole genome shotgun sequence (8936 bp)
Overview 1 RT 1: 1919-8057 bp Neighborhood of RT #1 [1919, 8057] COG4932 SpaA Big_8 Collagen_bind RVT-GII GIIM Feature: gene Location: 1919-3739 bp Feature: domain Description: COG4932 Location: 2000-3410 bp Feature: domain Description: COG4932 Location: 2 000-3410 bp Feature: domain Description: SpaA Location: 3551-3722 bp Feature: domain Description: SpaA Location: 3551-372 2 bp Feature: gene Location: 3666-4631 bp Feature: domain Description: Big_8 Location: 3885-4173 bp Feature: domain Description: Big_8 Location: 3885-4173 bp Feature: domain Description: Collagen_bind Location: 4284-4611 bp Feature: domain Description: Collagen_bind Location: 42 84-4611 bp Feature: gene Location: 4904-6316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5255-5876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 55-5876 bp Feature: domain Description: GIIM Note: maturase Location: 5930-6155 bp Feature: domain Description: GIIM Note: maturase Location: 5930-6155 bp Feature: gene Location: 6395-6628 bp Feature: gene Location: 6786-8057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4932 (Uncharacterized surface anchored protein ), SpaA (pfam17802), Big_8 (pfam17961), Collagen_bind (pfam05737), RVT-GII, GIIM (pfam08388)

Seq: JNLE01000005.1 Clostridium sp. KNHs205 BR73DRAFT_scf7180000000015_quiver.5_C, whole genome shotgun sequence (1629566 bp)
Overview 1 RT 1: 486173-489837 bp 2 RT 2: 740723-751415 bp 3 RT 3: 846165-850304 bp 4 RT 4: 1363661-1369201 bp 5 RT 5: 1618443-1628221 bp Neighborhood of RT #1 [486173, 489837] SsuE IscR RVT-GII GIIM Neighborhood of RT #2 [740723, 751429] RVT-GII GIIM GOGAT_sm_gam KOG0399 Neighborhood of RT #3 [846165, 850304] DegV DHFR_1 RVT-GII GIIM Neighborhood of RT #4 [1363661, 1369201] Peptidase_M56 Penicillinase_R RVT-GII GIIM Neighborhood of RT #5 [1618443, 1628221] COG4932 SpaA SpaA SpaA SpaA tand_rpt_95 Big_8 Collagen_bind RVT-GII GIIM RVT-GII GIIM SAPR Feature: gene Location: 486173-486745 bp Feature: domain Description: SsuE Location: 486212-486728 bp Feature: domain Description: SsuE Location: 486212-486728 bp Feature: gene Location: 486842-487264 bp Feature: domain Description: IscR Location: 486854-487250 bp Feature: domain Description: IscR Location: 486854-487250 bp Feature: gene Location: 487590-488906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487836-488451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48783 6-488451 bp Feature: domain Description: GIIM Note: maturase Location: 488511-488730 bp Feature: domain Description: GIIM Note: maturase Location: 488511-48873 0 bp Feature: gene Location: 489069-489386 bp Feature: gene Location: 489445-489837 bp Feature: gene Location: 740723-741220 bp Feature: gene Location: 741438-742616 bp Feature: gene Location: 743566-744882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743812-744427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743 812-744427 bp Feature: domain Description: GIIM Note: maturase Location: 744487-744706 bp Feature: domain Description: GIIM Note: maturase Location: 744487-744706 bp Feature: gene Location: 745372-746856 bp Feature: domain Description: GOGAT_sm_gam Location: 745381-746854 bp Feature: domain Description: GOGAT_sm_gam Location: 7453 81-746854 bp Feature: gene Location: 746870-751429 bp Feature: domain Description: KOG0399 Location: 746906-751415 bp Feature: domain Description: KOG03 99 Location: 746906-751415 bp Feature: gene Location: 846165-847073 bp Feature: domain Description: DegV Location: 846180-847014 bp Feature: domain Description: DegV Location: 846180-847014 bp Feature: gene Location: 847203-847691 bp Feature: domain Description: DHFR_1 Location: 847209-847680 bp Feature: domain Description: DHFR_1 Location: 847209-847680 bp Feature: gene Location: 848150-849562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848501-849122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848501-849122 bp Feature: domain Description: GIIM Note: maturase Location: 849176-849401 bp Feature: domain Description: GIIM Note: maturase Location: 849176-849401 bp Feature: gene Location: 849641-849874 bp Feature: gene Location: 850026-850304 bp Feature: gene Location: 1363661-1365448 bp Feature: domain Description: Peptidase_M56 Location: 1363682-1364597 bp Feature: domain Description: Peptidase_M56 Location: 13 63 682-13 64597 bp Feature: gene Location: 1365441-1365875 bp Feature: domain Description: Penicillinase_R Location: 1365513-1365852 bp Feature: domain Description: Penicillinase_R Location: 13 65513 -13 65852 bp Feature: gene Location: 1366048-1367460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366399-1367020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 663 99-13 67020 bp Feature: domain Description: GIIM Note: maturase Location: 1367074-1367299 bp Feature: domain Description: GIIM Note: maturase Location: 13 67074-13 67299 bp Feature: gene Location: 1367539-1367772 bp Feature: gene Location: 1367930-1369201 bp Feature: gene Location: 1618443-1621742 bp Feature: domain Description: COG4932 Location: 1618524-1619934 bp Feature: domain Description: COG493 2 Location: 1618524-161993 4 bp Feature: domain Description: SpaA Location: 1620075-1620273 bp Feature: domain Description: SpaA Location: 1620075-1620273 bp Feature: domain Description: SpaA Location: 1620387-1620564 bp Feature: domain Description: SpaA Location: 16203 87-1620564 bp Feature: domain Description: SpaA Location: 1620663-1620858 bp Feature: domain Description: SpaA Location: 1620663 -1620858 bp Feature: domain Description: SpaA Location: 1620942-1621137 bp Feature: domain Description: SpaA Location: 1620942-162113 7 bp Feature: domain Description: tand_rpt_95 Location: 1621410-1621575 bp Feature: domain Description: tand_rpt_95 Location: 1621410-1621575 bp Feature: gene Location: 1621669-1622634 bp Feature: domain Description: Big_8 Location: 1621888-1622176 bp Feature: domain Description: Big_8 Location: 1621888-1622176 bp Feature: domain Description: Collagen_bind Location: 1622287-1622614 bp Feature: domain Description: Collagen_bind Location: 1622287-1622614 bp Feature: gene Location: 1622907-1624319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623258-1623879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623 258-1623 879 bp Feature: domain Description: GIIM Note: maturase Location: 1623933-1624158 bp Feature: domain Description: GIIM Note: maturase Location: 1623 93 3 -1624158 bp Feature: gene Location: 1624398-1624631 bp Feature: gene Location: 1624903-1626219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1625149-1625764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1625149-1625764 bp Feature: domain Description: GIIM Note: maturase Location: 1625824-1626043 bp Feature: domain Description: GIIM Note: maturase Location: 1625824-1626043 bp Feature: gene Location: 1626743-1627696 bp Feature: domain Description: SAPR Location: 1626752-1627676 bp Feature: domain Description: SAPR Location: 1626752-1627676 bp Feature: gene Location: 1627901-1628221 bp Sorry, 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Associated domains:myRT SsuE (COG0431), IscR (TIGR02010), RVT-GII, GIIM (pfam08388), GOGAT_sm_gam (TIGR01317), KOG0399 (KOG0399, Glutamate synthase ), DegV (TIGR00762), DHFR_1 (pfam00186), Peptidase_M56 (pfam05569), Penicillinase_R (pfam03965)
COG4932 (Uncharacterized surface anchored protein ), SpaA (pfam17802), tand_rpt_95 (NF012211), Big_8 (pfam17961), Collagen_bind (pfam05737), SAPR (COG3947)