myRT

myRT report for GCA_000703065.1_ASM70306v1

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Seq: JNLK01000001.1 Lachnospiraceae bacterium AC2029 BO12DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence (3859732 bp)
Overview 1 RT 1: 1013600-1020209 bp 2 RT 2: 2071617-2079994 bp 3 RT 3: 3151574-3163916 bp Neighborhood of RT #1 [1013600, 1020274] Cthe_2159 RVT-GII GIIM hisS Neighborhood of RT #2 [2071617, 2080005] PPDK_N RVT-UG26 NHLM_micro_ABC2 NHLM_micro_ABC1 Neighborhood of RT #3 [3151574, 3163930] SpaA SpaA CollagenBindB FctA FctA SpaA FctA FctA SpaA SpaA SpaA RVT-GII GIIM PRK05273 OmpR Feature: gene Location: 1013600-1015276 bp Feature: gene Location: 1015481-1016746 bp Feature: domain Description: Cthe_2159 Location: 1015778-1016525 bp Feature: domain Description: Cthe_21 59 Location: 1 01 5778-1 01 6525 bp Feature: gene Location: 1016954-1018351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1017275-1017899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 7275-1 01 7899 bp Feature: domain Description: GIIM Note: maturase Location: 1017953-1018175 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 7953-1 01 81 75 bp Feature: gene Location: 1018553-1018858 bp Feature: gene Location: 1018874-1020274 bp Feature: domain Description: hisS Location: 1018985-1020209 bp Feature: domain Description: hisS Location: 1 01 8985-1 020209 bp Feature: gene Location: 2071617-2074187 bp Feature: domain Description: PPDK_N Location: 2072496-2073636 bp Feature: domain Description: PPDK_N Location: 2072496-2073636 bp Feature: gene Location: 2074274-2074426 bp Feature: gene Location: 2074462-2075667 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 2074663-2075278 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 2074663-2075278 bp Feature: gene Location: 2075672-2077849 bp Feature: domain Description: NHLM_micro_ABC2 Location: 2075960-2077832 bp Feature: domain Description: NHLM_micro_ABC2 Location: 2075960-2077832 bp Feature: gene Location: 2077861-2080005 bp Feature: domain Description: NHLM_micro_ABC1 Location: 2077867-2079994 bp Feature: domain Description: NHLM_micro_ABC1 Location: 2077867-2079994 bp Feature: gene Location: 3151574-3160618 bp Feature: domain Description: SpaA Location: 3154379-3154607 bp Feature: domain Description: SpaA Location: 31 54379-31 54607 bp Feature: domain Description: SpaA Location: 3154715-3154916 bp Feature: domain Description: SpaA Location: 31 5471 5-31 5491 6 bp Feature: domain Description: CollagenBindB Location: 3155423-3155729 bp Feature: domain Description: CollagenBindB Location: 31 55423-31 55729 bp Feature: domain Description: FctA Location: 3156101-3156500 bp Feature: domain Description: FctA Location: 31 561 01 -31 56500 bp Feature: domain Description: FctA Location: 3157175-3157499 bp Feature: domain Description: FctA Location: 31 571 75-31 57499 bp Feature: domain Description: SpaA Location: 3158009-3158204 bp Feature: domain Description: SpaA Location: 31 58009-31 58204 bp Feature: domain Description: FctA Location: 3158372-3158717 bp Feature: domain Description: FctA Location: 31 58372-31 5871 7 bp Feature: domain Description: FctA Location: 3158771-3159143 bp Feature: domain Description: FctA Location: 31 58771 -31 591 43 bp Feature: domain Description: SpaA Location: 3159566-3159752 bp Feature: domain Description: SpaA Location: 31 59566-31 59752 bp Feature: domain Description: SpaA Location: 3159869-3160067 bp Feature: domain Description: SpaA Location: 31 59869-31 60067 bp Feature: domain Description: SpaA Location: 3160235-3160424 bp Feature: domain Description: SpaA Location: 31 60235-31 60424 bp Feature: gene Location: 3160710-3160856 bp Feature: gene Location: 3161118-3162515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3161439-3162063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 61 439-31 62063 bp Feature: domain Description: GIIM Note: maturase Location: 3162117-3162339 bp Feature: domain Description: GIIM Note: maturase Location: 31 621 1 7-31 62339 bp Feature: gene Location: 3162779-3163246 bp Feature: domain Description: PRK05273 Location: 3162782-3163217 bp Feature: domain Description: PRK05273 Location: 31 62782-31 6321 7 bp Feature: gene Location: 3163250-3163930 bp Feature: domain Description: OmpR Location: 3163256-3163916 bp Feature: domain Description: OmpR Location: 31 63256-31 6391 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cthe_2159 (pfam14262), RVT-GII, GIIM (pfam08388), hisS (TIGR00442), PPDK_N (pfam01326), RVT-UG26, NHLM_micro_ABC2 (TIGR03797), NHLM_micro_ABC1 (TIGR03796), SpaA (pfam17802), CollagenBindB (cl15753)
FctA (pfam12892), PRK05273 (D-tyrosyl-tRNA(Tyr) deacylase; Provisional), OmpR (COG0745)