myRT

myRT report for GCA_000703565.1_ASM70356v1

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Seq: JNPZ01000043.1 (31903 bp)
Overview 1 RT 1: 1-1845 bp Neighborhood of RT #1 [1, 1910] RVT-GII YkfC PHA02517 Feature: gene Location: 1-414 bp Ori: KDX04578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-400 bp Feature: gene Location: 408-740 bp Ori: KDX04579.1 Feature: domain Description: YkfC Location: 411-705 bp Feature: domain Description: YkfC Location: 41 1 -705 bp Feature: gene Location: 1347-1910 bp Ori: KDX04597.1 Feature: domain Description: PHA02517 Location: 1491-1845 bp Feature: domain Description: PHA0251 7 Location: 1 491 -1 845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JNPZ01000106.1 (2822 bp)
Overview 1 RT 1: 1-1672 bp Neighborhood of RT #1 [1, 1689] RVT-GII GIIM HNHc RVT-GII Feature: gene Location: 1-186 bp Feature: gene Location: 414-1418 bp Ori: KDW99089.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 0-72 9 bp Feature: domain Description: GIIM Note: maturase Location: 780-1014 bp Feature: domain Description: GIIM Note: maturase Location: 780-1014 bp Feature: domain Description: HNHc Note: nucleases Location: 1224-1383 bp Feature: domain Description: HNHc Note: nucleases Location: 12 2 4-1383 bp Feature: gene Location: 1411-1689 bp Ori: KDW99091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414-1672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JNPZ01000065.1 (10386 bp)
Overview 1 RT 1: 538-4183 bp Neighborhood of RT #1 [538, 4188] TnpB_IS66 COG3436 RVT-GII GIIM PinE Feature: gene Location: 538-834 bp Ori: KDX02978.1 Feature: domain Description: TnpB_IS66 Location: 541-802 bp Feature: domain Description: TnpB_IS66 Location: 541-802 bp Feature: gene Location: 865-1791 bp Ori: KDX02975.1 Feature: domain Description: COG3436 Location: 1201-1681 bp Feature: domain Description: COG3 43 6 Location: 1201-1681 bp Feature: gene Location: 1881-2921 bp Ori: KDX02974.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890-2508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890-2508 bp Feature: domain Description: GIIM Note: maturase Location: 2556-2787 bp Feature: domain Description: GIIM Note: maturase Location: 2556-2787 bp Feature: gene Location: 3130-3531 bp Feature: gene Location: 3631-4188 bp Ori: KDX02966.1 Gene: tnpR Feature: domain Description: PinE Location: 3634-4183 bp Feature: domain Description: PinE Location: 3 63 4-4183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: JNPZ01000089.1 (5583 bp)
Overview 1 RT 1: 2204-5462 bp Neighborhood of RT #1 [2204, 5497] RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 2204-2434 bp Feature: gene Location: 2526-2663 bp Feature: gene Location: 4222-4500 bp Ori: KDX00484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4225-4483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 225-4 4 83 bp Feature: gene Location: 4493-5497 bp Ori: KDX00485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4499-4808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 99-4 808 bp Feature: domain Description: GIIM Note: maturase Location: 4859-5093 bp Feature: domain Description: GIIM Note: maturase Location: 4 859-5093 bp Feature: domain Description: HNHc Note: nucleases Location: 5303-5462 bp Feature: domain Description: HNHc Note: nucleases Location: 5303-54 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JNPZ01000083.1 (6292 bp)
Overview 1 RT 1: 355-5810 bp Neighborhood of RT #1 [355, 6034] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 355-3450 bp Ori: KDX01190.1 Feature: domain Description: Peptidase_S6 Location: 376-1657 bp Feature: domain Description: Peptidase_S6 Location: 376-165 7 bp Feature: domain Description: autotrans_barl Location: 2221-3448 bp Feature: domain Description: autotrans_barl Location: 2221-3448 bp Feature: gene Location: 4638-5009 bp Ori: KDX01191.1 Feature: domain Description: PHA02517 Location: 4641-5007 bp Feature: domain Description: PHA025 17 Location: 4641-5 007 bp Feature: gene Location: 5201-6034 bp Ori: KDX01192.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5207-5516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 207-5 5 16 bp Feature: domain Description: GIIM Note: maturase Location: 5591-5810 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 91-5 810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JNPZ01000094.1 (4677 bp)
Overview 1 RT 1: 636-4258 bp Neighborhood of RT #1 [636, 4320] RVT-GII ImpA_N VasL Feature: gene Location: 636-1466 bp Ori: KDX00012.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894-1353 bp Feature: gene Location: 2469-2687 bp Feature: gene Location: 3166-4320 bp Ori: KDX00009.1 Feature: domain Description: ImpA_N Location: 3208-3499 bp Feature: domain Description: ImpA_N Location: 3208-3499 bp Feature: domain Description: VasL Location: 4000-4258 bp Feature: domain Description: VasL Location: 4000-4258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ImpA_N (pfam06812), VasL (pfam12486)

Seq: JNPZ01000075.1 (7507 bp)
Overview 1 RT 1: 1-1707 bp Neighborhood of RT #1 [1, 1772] RVT-GII YkfC PHA02517 Feature: gene Location: 1-414 bp Ori: KDX02440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 -400 bp Feature: gene Location: 408-740 bp Ori: KDX02442.1 Feature: domain Description: YkfC Location: 411-705 bp Feature: domain Description: YkfC Location: 411-7 05 bp Feature: gene Location: 1347-1772 bp Ori: KDX02441.1 Feature: domain Description: PHA02517 Location: 1371-1707 bp Feature: domain Description: PHA02517 Location: 137 1-17 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JNPZ01000053.1 (20607 bp)
Overview 1 RT 1: 15424-19457 bp Neighborhood of RT #1 [15424, 19474] AcrR MFS_TetA RVT-GII GIIM HNHc RVT-GII Feature: gene Location: 15424-16017 bp Ori: KDX03735.1 Gene: tetC Feature: domain Description: AcrR Location: 15472-15739 bp Feature: domain Description: AcrR Location: 15472-15739 bp Feature: gene Location: 16130-17335 bp Ori: KDX03737.1 Gene: tetA Feature: domain Description: MFS_TetA Location: 16148-17285 bp Feature: domain Description: MFS_TetA Location: 16148 -1728 5 bp Feature: gene Location: 18199-19203 bp Ori: KDX03738.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18205-18514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18 205-18 514 bp Feature: domain Description: GIIM Note: maturase Location: 18565-18799 bp Feature: domain Description: GIIM Note: maturase Location: 18 565-18 799 bp Feature: domain Description: HNHc Note: nucleases Location: 19009-19168 bp Feature: domain Description: HNHc Note: nucleases Location: 19009-19168 bp Feature: gene Location: 19196-19474 bp Ori: KDX03752.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19199-19457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19199-19457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), MFS_TetA (cd17388), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JNPZ01000097.1 (4186 bp)
Overview 1 RT 1: 1134-2825 bp Neighborhood of RT #1 [1134, 2825] RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 1134-1412 bp Ori: KDW99769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1137-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1137-139 5 bp Feature: gene Location: 1405-2409 bp Ori: KDW99767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1411-1720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1411-1720 bp Feature: domain Description: GIIM Note: maturase Location: 1771-2005 bp Feature: domain Description: GIIM Note: maturase Location: 1771-2005 bp Feature: domain Description: HNHc Note: nucleases Location: 2215-2374 bp Feature: domain Description: HNHc Note: nucleases Location: 2215-2374 bp Feature: gene Location: 2524-2643 bp Feature: gene Location: 2679-2825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JNPZ01000071.1 (7969 bp)
Overview 1 RT 1: 5260-7487 bp Neighborhood of RT #1 [5260, 7711] COG3547 PHA02517 RVT-GII GIIM Feature: gene Location: 5260-6336 bp Ori: KDX02641.1 Feature: domain Description: COG3547 Location: 5299-6220 bp Feature: domain Description: COG3547 Location: 5299-6220 bp Feature: gene Location: 6555-6683 bp Ori: KDX02642.1 Feature: domain Description: PHA02517 Location: 6558-6648 bp Feature: domain Description: PHA02517 Location: 6558-6648 bp Feature: gene Location: 6878-7711 bp Ori: KDX02639.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6884-7193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6884-7193 bp Feature: domain Description: GIIM Note: maturase Location: 7268-7487 bp Feature: domain Description: GIIM Note: maturase Location: 7268-7487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JNPZ01000105.1 (2852 bp)
Overview 1 RT 1: 81-1702 bp Neighborhood of RT #1 [81, 1719] RVT-GII GIIM HNHc RVT-GII Feature: gene Location: 81-329 bp Feature: gene Location: 444-1448 bp Ori: KDW99202.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-759 bp Feature: domain Description: GIIM Note: maturase Location: 810-1044 bp Feature: domain Description: GIIM Note: maturase Location: 810-1044 bp Feature: domain Description: HNHc Note: nucleases Location: 1254-1413 bp Feature: domain Description: HNHc Note: nucleases Location: 1254-1413 bp Feature: gene Location: 1441-1719 bp Ori: KDW99203.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1444-1702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1444-1702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JNPZ01000064.1 (10855 bp)
Overview 1 RT 1: 7687-10373 bp Neighborhood of RT #1 [7687, 10597] fecE RVT-GII GIIM Feature: gene Location: 7687-8298 bp Ori: KDX03037.1 Feature: domain Description: fecE Location: 7690-8296 bp Feature: domain Description: fecE Location: 7690-8296 bp Feature: gene Location: 8856-8999 bp Feature: gene Location: 9764-10597 bp Ori: KDX03031.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9770-10079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9770-10079 bp Feature: domain Description: GIIM Note: maturase Location: 10154-10373 bp Feature: domain Description: GIIM Note: maturase Location: 10154-10373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fecE (PRK11231), RVT-GII, GIIM (pfam08388)

Seq: JNPZ01000107.1 (2604 bp)
Overview 1 RT 1: 2-2122 bp Neighborhood of RT #1 [2, 2346] COG3547 PHA02517 RVT-GII GIIM Feature: gene Location: 2-901 bp Ori: KDW98991.1 Feature: domain Description: COG3547 Location: 11-773 bp Feature: domain Description: COG3547 Location: 11-773 bp Feature: gene Location: 950-1321 bp Ori: KDW98990.1 Feature: domain Description: PHA02517 Location: 953-1319 bp Feature: domain Description: PHA02517 Location: 953-13 19 bp Feature: gene Location: 1513-2346 bp Ori: KDW98992.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1519-1828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1519-1828 bp Feature: domain Description: GIIM Note: maturase Location: 1903-2122 bp Feature: domain Description: GIIM Note: maturase Location: 1903-2122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JNPZ01000154.1 (1258 bp)
Overview 1 RT 1: 167-776 bp Neighborhood of RT #1 [167, 1000] RVT-GII GIIM Feature: gene Location: 167-1000 bp Ori: KDW96441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173-482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173-482 bp Feature: domain Description: GIIM Note: maturase Location: 557-776 bp Feature: domain Description: GIIM Note: maturase Location: 557-776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)