myRT

myRT report for GCA_000704685.1_ASM70468v1

Download annotations/find similar RTs

Seq: JNRO01000005.1 (238696 bp)
Overview 1 RT 1: 224758-230077 bp Neighborhood of RT #1 [224758, 230077] PtsN LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 224758-225201 bp Feature: domain Description: PtsN Location: 224761-225196 bp Feature: domain Description: PtsN Location: 224761 -2251 96 bp Feature: gene Location: 225472-226503 bp Feature: domain Description: LacI Location: 225514-225649 bp Feature: domain Description: LacI Location: 22551 4-225649 bp Feature: domain Description: PBP1_GntR Location: 225688-226498 bp Feature: domain Description: PBP1 _GntR Location: 225688-226498 bp Feature: gene Location: 227030-227836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227033-227396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227033-227396 bp Feature: domain Description: GIIM Note: maturase Location: 227444-227666 bp Feature: domain Description: GIIM Note: maturase Location: 227444-227666 bp Feature: gene Location: 227854-228288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228046-228262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228046-228262 bp Feature: gene Location: 229197-229523 bp Feature: gene Location: 229733-230077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PtsN (COG1762), LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)

Seq: JNRO01000021.1 (76177 bp)
Overview 1 RT 1: 72926-75207 bp Neighborhood of RT #1 [72926, 75452] COG3436 PHA02517 RVT-GII GIIM Feature: gene Location: 72926-73255 bp Feature: domain Description: COG3436 Location: 72929-73196 bp Feature: domain Description: COG3436 Location: 72 92 9-73196 bp Feature: gene Location: 73381-73752 bp Feature: domain Description: PHA02517 Location: 73384-73750 bp Feature: domain Description: PHA02 517 Location: 73384-73750 bp Feature: gene Location: 73944-75452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74202-74934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 02 -74934 bp Feature: domain Description: GIIM Note: maturase Location: 75009-75207 bp Feature: domain Description: GIIM Note: maturase Location: 75009-752 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JNRO01000034.1 (37839 bp)
Overview 1 RT 1: 35137-37486 bp Neighborhood of RT #1 [35137, 37731] PHA02517 PHA02517 RVT-GII GIIM Feature: gene Location: 35137-35349 bp Feature: domain Description: PHA02517 Location: 35197-35347 bp Feature: domain Description: PHA02517 Location: 3 5197-3 53 47 bp Feature: gene Location: 35404-35616 bp Feature: domain Description: PHA02517 Location: 35407-35551 bp Feature: domain Description: PHA02517 Location: 3 5407-3 5551 bp Feature: gene Location: 36223-37731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36481-37213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6481-3 7213 bp Feature: domain Description: GIIM Note: maturase Location: 37288-37486 bp Feature: domain Description: GIIM Note: maturase Location: 3 7288-3 7486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JNRO01000040.1 (29063 bp)
Overview 1 RT 1: 1450-10162 bp Neighborhood of RT #1 [1450, 10164] PAAR_2 RhsA RHS_repeat RhsA RhsA RVT-GII GIIM YhhI YhhI PRK01271 Feature: gene Location: 1450-5670 bp Feature: domain Description: PAAR_2 Location: 1456-1537 bp Feature: domain Description: PAAR_2 Location: 14 56-1537 bp Feature: domain Description: RhsA Location: 2038-2482 bp Feature: domain Description: RhsA Location: 2038-24 82 bp Feature: domain Description: RHS_repeat Location: 2545-2635 bp Feature: domain Description: RHS_repeat Location: 254 5-2635 bp Feature: domain Description: RhsA Location: 2704-3040 bp Feature: domain Description: RhsA Location: 2704 -304 0 bp Feature: domain Description: RhsA Location: 3067-5236 bp Feature: domain Description: RhsA Location: 3067-5236 bp Feature: gene Location: 6714-7058 bp Feature: gene Location: 7695-8906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7860-8517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7860-8517 bp Feature: domain Description: GIIM Note: maturase Location: 8601-8811 bp Feature: domain Description: GIIM Note: maturase Location: 8601-8811 bp Feature: gene Location: 9113-9904 bp Feature: domain Description: YhhI Location: 9116-9479 bp Feature: domain Description: YhhI Location: 9116-94 79 bp Feature: domain Description: YhhI Location: 9536-9887 bp Feature: domain Description: YhhI Location: 9536-9887 bp Feature: gene Location: 9937-10164 bp Feature: domain Description: PRK01271 Location: 9940-10162 bp Feature: domain Description: PRK01271 Location: 994 0-10162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII, GIIM (pfam08388), YhhI (COG5433), PRK01271 (tautomerase PptA)

Seq: JNRO01000045.1 (19329 bp)
Overview 1 RT 1: 726-4629 bp 2 RT 2: 16352-18976 bp Neighborhood of RT #1 [726, 4661] RVT-GII GIIM PHA02517 MelB Neighborhood of RT #2 [16352, 19221] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 726-2234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984-1716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984-1716 bp Feature: domain Description: GIIM Note: maturase Location: 1791-1989 bp Feature: domain Description: GIIM Note: maturase Location: 1791-1989 bp Feature: gene Location: 2412-2798 bp Feature: domain Description: PHA02517 Location: 2415-2796 bp Feature: domain Description: PHA025 17 Location: 2415 -2796 bp Feature: gene Location: 3297-4661 bp Feature: domain Description: MelB Location: 3312-4629 bp Feature: domain Description: MelB Location: 3312-4629 bp Feature: gene Location: 16352-16627 bp Feature: domain Description: InsE Location: 16394-16625 bp Feature: domain Description: InsE Location: 16394-16625 bp Feature: gene Location: 16627-17106 bp Feature: domain Description: PHA02517 Location: 16687-17041 bp Feature: domain Description: PHA025 17 Location: 16687-17041 bp Feature: gene Location: 17713-19221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17971-18703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17971-18703 bp Feature: domain Description: GIIM Note: maturase Location: 18778-18976 bp Feature: domain Description: GIIM Note: maturase Location: 18778-18976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), MelB (COG2211), RVT-GII, GIIM (pfam08388), InsE (COG2963)