myRT

myRT report for GCA_000704765.1_ASM70476v1

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Seq: JNRQ01000059.1 (9919 bp)
Overview 1 RT 1: 1-8109 bp Neighborhood of RT #1 [1, 8543] YhhI YhhI YhhI RVT-GII GIIM PAAR_2 RhsA RHS_repeat RhsA RhsA Feature: gene Location: 1-880 bp Feature: domain Description: YhhI Location: 4-367 bp Feature: domain Description: YhhI Location: 4-367 bp Feature: domain Description: YhhI Location: 424-778 bp Feature: domain Description: YhhI Location: 424-778 bp Feature: domain Description: YhhI Location: 778-877 bp Feature: domain Description: YhhI Location: 778-877 bp Feature: gene Location: 1087-2298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1252-1909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 252-1 909 bp Feature: domain Description: GIIM Note: maturase Location: 1993-2203 bp Feature: domain Description: GIIM Note: maturase Location: 1 993-2203 bp Feature: gene Location: 2935-3279 bp Feature: gene Location: 4323-8543 bp Feature: domain Description: PAAR_2 Location: 4329-4410 bp Feature: domain Description: PAAR_2 Location: 4329-441 0 bp Feature: domain Description: RhsA Location: 4911-5355 bp Feature: domain Description: RhsA Location: 491 1 -5355 bp Feature: domain Description: RHS_repeat Location: 5418-5508 bp Feature: domain Description: RHS_repeat Location: 541 8-5508 bp Feature: domain Description: RhsA Location: 5577-5913 bp Feature: domain Description: RhsA Location: 5577-591 3 bp Feature: domain Description: RhsA Location: 5940-8109 bp Feature: domain Description: RhsA Location: 5940-81 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhI (COG5433), PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593)

Seq: JNRQ01000012.1 (142778 bp)
Overview 1 RT 1: 8438-13752 bp Neighborhood of RT #1 [8438, 13757] RVT-GII RVT-GII GIIM LacI PBP1_GntR PtsN Feature: gene Location: 8438-8782 bp Feature: gene Location: 8992-9318 bp Feature: gene Location: 10227-10661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10419-10635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10419-10635 bp Feature: gene Location: 10679-11485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10682-11045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10682 -11045 bp Feature: domain Description: GIIM Note: maturase Location: 11093-11315 bp Feature: domain Description: GIIM Note: maturase Location: 11093-11315 bp Feature: gene Location: 12012-13043 bp Feature: domain Description: LacI Location: 12054-12189 bp Feature: domain Description: LacI Location: 12 054-12 189 bp Feature: domain Description: PBP1_GntR Location: 12228-13038 bp Feature: domain Description: PBP1_GntR Location: 12 2 2 8-13038 bp Feature: gene Location: 13314-13757 bp Feature: domain Description: PtsN Location: 13317-13752 bp Feature: domain Description: PtsN Location: 13317-13752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575), PtsN (COG1762)

Seq: JNRQ01000047.1 (21849 bp)
Overview 1 RT 1: 19140-21489 bp Neighborhood of RT #1 [19140, 21734] PHA02517 PHA02517 RVT-GII GIIM Feature: gene Location: 19140-19352 bp Feature: domain Description: PHA02517 Location: 19200-19350 bp Feature: domain Description: PHA02517 Location: 19200-193 50 bp Feature: gene Location: 19407-19619 bp Feature: domain Description: PHA02517 Location: 19410-19554 bp Feature: domain Description: PHA02517 Location: 19410-19554 bp Feature: gene Location: 20226-21734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20484-21216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20484-21216 bp Feature: domain Description: GIIM Note: maturase Location: 21291-21489 bp Feature: domain Description: GIIM Note: maturase Location: 21291-21489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JNRQ01000053.1 (15526 bp)
Overview 1 RT 1: 12839-14759 bp Neighborhood of RT #1 [12839, 14911] PHA02517 RVT-GII Feature: gene Location: 12839-13225 bp Feature: domain Description: PHA02517 Location: 12842-13223 bp Feature: domain Description: PHA02517 Location: 1284 2-13223 bp Feature: gene Location: 13403-13750 bp Feature: gene Location: 13769-14911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14027-14759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 027-14 759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: JNRQ01000061.1 (9263 bp)
Overview 1 RT 1: 116-2983 bp Neighborhood of RT #1 [116, 2985] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 116-1624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1106 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1379 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1379 bp Feature: gene Location: 2231-2710 bp Feature: domain Description: PHA02517 Location: 2291-2645 bp Feature: domain Description: PHA025 17 Location: 2291-2645 bp Feature: gene Location: 2710-2985 bp Feature: domain Description: InsE Location: 2752-2983 bp Feature: domain Description: InsE Location: 275 2-2983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: JNRQ01000023.1 (71804 bp)
Overview 1 RT 1: 68663-70944 bp Neighborhood of RT #1 [68663, 71189] COG3436 PHA02517 RVT-GII GIIM Feature: gene Location: 68663-68992 bp Feature: domain Description: COG3436 Location: 68666-68933 bp Feature: domain Description: COG3436 Location: 6 86 6 6 -6 8933 bp Feature: gene Location: 69118-69489 bp Feature: domain Description: PHA02517 Location: 69121-69487 bp Feature: domain Description: PHA02517 Location: 6 9121-6 9487 bp Feature: gene Location: 69681-71189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69939-70671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 9939-706 71 bp Feature: domain Description: GIIM Note: maturase Location: 70746-70944 bp Feature: domain Description: GIIM Note: maturase Location: 70746 -70944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)