myRT

myRT report for GCA_000705175.1_RH_uta_asm_1-2773

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Seq: JGZW01000198.1 (685777 bp)
Overview 1 RT 1: 278408-282806 bp Neighborhood of RT #1 [278408, 282806] SMC_prok_B RVT-DGRs Avd_like Feature: gene Location: 278408-278866 bp Feature: gene Location: 278863-280377 bp Feature: domain Description: SMC_prok_B Location: 279223-279691 bp Feature: domain Description: SMC_prok_B Location: 279223-279691 bp Feature: gene Location: 280374-281444 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 280530-281292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 280530-281 292 bp Feature: gene Location: 281767-282129 bp Feature: domain Description: Avd_like Location: 281794-282106 bp Feature: domain Description: Avd_like Location: 281 794-2821 06 bp Feature: gene Location: 282144-282806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), RVT-DGRs, Avd_like (cd16376)

Seq: JGZW01000193.1 (1330257 bp)
Overview 1 RT 1: 362647-371505 bp 2 RT 2: 387769-401029 bp Neighborhood of RT #1 [362647, 371513] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [387769, 401061] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH IMPa_N_2 IMPa_helical Peptidase_M60 DUF4375 Feature: gene Location: 362647-363321 bp Feature: domain Description: NTP_transferase_like_1 Location: 362653-363292 bp Feature: domain Description: NTP_transferase_like_1 Location: 362 653-3632 92 bp Feature: gene Location: 363318-364334 bp Feature: domain Description: COG3178 Location: 363321-364320 bp Feature: domain Description: COG3178 Location: 36332 1-36432 0 bp Feature: gene Location: 365606-367318 bp Feature: RT Description: RVT_N Location: 365663-365906 bp Feature: RT Description: RVT_N Location: 365663-365906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365951-366587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365951-366587 bp Feature: domain Description: YkfC Location: 366797-366947 bp Feature: domain Description: YkfC Location: 366797-366947 bp Feature: domain Description: HNH Note: nucleases Location: 367124-367262 bp Feature: domain Description: HNH Note: nucleases Location: 36712 4-3672 62 bp Feature: gene Location: 367451-370240 bp Feature: domain Description: LptD Location: 367646-370226 bp Feature: domain Description: LptD Location: 367646-3702 2 6 bp Feature: gene Location: 370221-371513 bp Feature: domain Description: PRK10770 Location: 370311-371505 bp Feature: domain Description: PRK10770 Location: 370311-371505 bp Feature: gene Location: 387769-389622 bp Feature: domain Description: PRK05658 Location: 387781-389620 bp Feature: domain Description: PRK05658 Location: 387781-38962 0 bp Feature: gene Location: 389729-393466 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 389837-390494 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 389837-390494 bp Feature: domain Description: PRK09776 Location: 390707-391178 bp Feature: domain Description: PRK09776 Location: 390707-391178 bp Feature: domain Description: PAS Location: 391250-391760 bp Feature: domain Description: PAS Location: 3912 50-391760 bp Feature: domain Description: PRK10060 Location: 391769-393416 bp Feature: domain Description: PRK10060 Location: 391769-393416 bp Feature: gene Location: 394547-396232 bp Feature: RT Description: RVT_N Location: 394604-394844 bp Feature: RT Description: RVT_N Location: 394604-394844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394892-395528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394892 -39552 8 bp Feature: domain Description: GIIM Note: maturase Location: 395582-395813 bp Feature: domain Description: GIIM Note: maturase Location: 395582 -395813 bp Feature: domain Description: HNH Note: nucleases Location: 396065-396203 bp Feature: domain Description: HNH Note: nucleases Location: 396065-3962 03 bp Feature: gene Location: 397485-400256 bp Feature: domain Description: IMPa_N_2 Location: 397737-398319 bp Feature: domain Description: IMPa_N_2 Location: 397737-398319 bp Feature: domain Description: IMPa_helical Location: 398400-398727 bp Feature: domain Description: IMPa_helical Location: 398400-39872 7 bp Feature: domain Description: Peptidase_M60 Location: 399171-400101 bp Feature: domain Description: Peptidase_M60 Location: 399171-400101 bp Feature: gene Location: 400447-401061 bp Feature: domain Description: DUF4375 Location: 400666-401029 bp Feature: domain Description: DUF4375 Location: 400666-40102 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402), DUF4375 (pfam14300)