myRT

myRT report for GCA_000705615.1_CCGM1.1

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Seq: JFGP01000011.1 Rhizobium leguminosarum bv. phaseoli CCGM1 scaffold11, whole genome shotgun sequence (50052 bp)
Overview 1 RT 1: 4300-9419 bp Neighborhood of RT #1 [4300, 9433] RVT-GII ArdC groEL Feature: gene Location: 4300-4836 bp Feature: gene Location: 4935-5306 bp Feature: gene Location: 5617-7095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6028-6718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6028-671 8 bp Feature: gene Location: 7994-8914 bp Feature: domain Description: ArdC Location: 7997-8897 bp Feature: domain Description: ArdC Location: 7997-8897 bp Feature: gene Location: 9173-9433 bp Feature: domain Description: groEL Location: 9215-9419 bp Feature: domain Description: groEL Location: 921 5-941 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ArdC (COG4227), groEL (PRK12852)

Seq: JFGP01000014.1 Rhizobium leguminosarum bv. phaseoli CCGM1 scaffold14, whole genome shotgun sequence (92125 bp)
Overview 1 RT 1: 82902-89165 bp Neighborhood of RT #1 [82902, 89248] AHP1 fixK RVT-GII Transposase_mut Transposase_mut Feature: gene Location: 82902-83441 bp Feature: domain Description: AHP1 Location: 82908-83421 bp Feature: domain Description: AHP1 Location: 82 908-8342 1 bp Feature: gene Location: 84324-85091 bp Feature: domain Description: fixK Location: 84519-85074 bp Feature: domain Description: fixK Location: 84519-85074 bp Feature: gene Location: 86763-87050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86766-86985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86766-86985 bp Feature: gene Location: 88069-89049 bp Feature: domain Description: Transposase_mut Location: 88078-89008 bp Feature: domain Description: Transposase_mut Location: 88078-89008 bp Feature: gene Location: 89054-89248 bp Feature: domain Description: Transposase_mut Location: 89057-89165 bp Feature: domain Description: Transposase_mut Location: 89057-89165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AHP1 (COG0678), fixK (PRK09391), RVT-GII, Transposase_mut (pfam00872)

Seq: JFGP01000009.1 Rhizobium leguminosarum bv. phaseoli CCGM1 scaffold09, whole genome shotgun sequence (164235 bp)
Overview 1 RT 1: 18943-24875 bp Neighborhood of RT #1 [18943, 24889] PinE Zn_ribbon_recom HTH_MerR-trunc RVT-GII gabD Feature: gene Location: 18943-21021 bp Feature: domain Description: PinE Location: 18979-19558 bp Feature: domain Description: PinE Location: 18979-19558 bp Feature: domain Description: Zn_ribbon_recom Location: 19897-20071 bp Feature: domain Description: Zn_ribbon_recom Location: 19897-20071 bp Feature: domain Description: HTH_MerR-trunc Location: 20773-20902 bp Feature: domain Description: HTH_MerR-trunc Location: 20773 -20902 bp Feature: gene Location: 21014-21211 bp Feature: gene Location: 22246-22869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22411-22855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22411-22855 bp Feature: gene Location: 22935-23120 bp Feature: gene Location: 23402-24889 bp Feature: domain Description: gabD Location: 23432-24875 bp Feature: domain Description: gabD Location: 23 43 2-24875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_MerR-trunc (cd04762), RVT-GII, gabD (PRK11241)