myRT

myRT report for GCA_000706585.1_Kleb_pneu_UCI_17_V1

Download annotations/find similar RTs

Seq: KL407317.1 Klebsiella pneumoniae UCI 17 genomic scaffold adjcw-supercont1.1, whole genome shotgun sequence (3949705 bp)
Overview 1 RT 1: 5686-11560 bp 2 RT 2: 73688-77390 bp 3 RT 3: 1307897-1314380 bp 4 RT 4: 1758252-1761693 bp Neighborhood of RT #1 [5686, 11562] DDE_Tnp_1 RVT-GII PRK10276 umuC Neighborhood of RT #2 [73688, 77395] Laminin_G_3 RVT-GII PRK10597 Neighborhood of RT #3 [1307897, 1314382] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #4 [1758252, 1761693] Terminase_2 RVT-GII Feature: gene Location: 5686-5791 bp Feature: gene Location: 6590-7111 bp Feature: domain Description: DDE_Tnp_1 Location: 6611-6884 bp Feature: domain Description: DDE_Tnp_1 Location: 661 1 -6884 bp Feature: gene Location: 8312-9796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8714-9404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871 4-9404 bp Feature: gene Location: 9789-10295 bp Feature: domain Description: PRK10276 Location: 9879-10290 bp Feature: domain Description: PRK1 0276 Location: 9879-1 0290 bp Feature: gene Location: 10297-11562 bp Feature: domain Description: umuC Location: 10300-11560 bp Feature: domain Description: umuC Location: 1 0300-1 1 560 bp Feature: gene Location: 73688-74419 bp Feature: domain Description: Laminin_G_3 Location: 74024-74363 bp Feature: domain Description: Laminin_G_3 Location: 74024-74363 bp Feature: gene Location: 74416-74625 bp Feature: gene Location: 75078-76562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75480-76170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75480-761 70 bp Feature: gene Location: 76640-76924 bp Feature: gene Location: 77147-77395 bp Feature: domain Description: PRK10597 Location: 77150-77390 bp Feature: domain Description: PRK1 0597 Location: 771 50-77390 bp Feature: gene Location: 1307897-1308955 bp Feature: domain Description: YccC Location: 1307903-1308941 bp Feature: domain Description: YccC Location: 1 307903-1 308941 bp Feature: gene Location: 1309054-1309527 bp Feature: domain Description: PRK10016 Location: 1309057-1309516 bp Feature: domain Description: PRK1 001 6 Location: 1 309057-1 30951 6 bp Feature: gene Location: 1309609-1311093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1310011-1310701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 001 1 -1 31 0701 bp Feature: gene Location: 1311614-1312777 bp Feature: domain Description: dacD Location: 1311617-1312772 bp Feature: domain Description: dacD Location: 1 31 1 61 7-1 31 2772 bp Feature: gene Location: 1312958-1314382 bp Feature: domain Description: SbcB Location: 1312964-1314380 bp Feature: domain Description: SbcB Location: 1 31 2964-1 31 4380 bp Feature: gene Location: 1758252-1758836 bp Feature: domain Description: Terminase_2 Location: 1758297-1758762 bp Feature: domain Description: Terminase_2 Location: 1 758297-1 758762 bp Feature: gene Location: 1758914-1759255 bp Feature: gene Location: 1759248-1760732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1759650-1760340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 759650-1 760340 bp Feature: gene Location: 1761156-1761494 bp Feature: gene Location: 1761487-1761693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Laminin_G_3 (pfam13385), PRK10597 (DNA damage-inducible protein I; Provisional), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925), Terminase_2 (pfam03592)

Seq: KL407318.1 Klebsiella pneumoniae UCI 17 genomic scaffold adjcw-supercont1.2, whole genome shotgun sequence (1485570 bp)
Overview 1 RT 1: 979651-985256 bp 2 RT 2: 1329633-1335051 bp Neighborhood of RT #1 [979651, 985282] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1329633, 1335053] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Feature: gene Location: 979651-980214 bp Feature: domain Description: YbjK Location: 979657-980194 bp Feature: domain Description: YbjK Location: 979657-980194 bp Feature: gene Location: 980337-981389 bp Feature: domain Description: int Location: 980340-981339 bp Feature: domain Description: int Location: 980340-981339 bp Feature: gene Location: 981808-983292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982210-982900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982 2 10-982 900 bp Feature: gene Location: 983391-984335 bp Feature: gene Location: 984347-985282 bp Feature: domain Description: Phage_CI_repr Location: 984431-984614 bp Feature: domain Description: Phage_CI_repr Location: 984431-984614 bp Feature: domain Description: Phage_CI_repr Location: 984743-984935 bp Feature: domain Description: Phage_CI_repr Location: 984743-984935 bp Feature: domain Description: Phage_CI_C Location: 984962-985256 bp Feature: domain Description: Phage_CI_C Location: 984962 -9852 56 bp Feature: gene Location: 1329633-1330772 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1329816-1330716 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 132 9816-1330716 bp Feature: gene Location: 1330943-1331185 bp Feature: domain Description: DinI Location: 1330994-1331174 bp Feature: domain Description: DinI Location: 1330994-1331174 bp Feature: gene Location: 1331803-1333287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1332205-1332895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1332 2 05-1332 895 bp Feature: gene Location: 1333366-1333785 bp Feature: domain Description: PRK10276 Location: 1333369-1333780 bp Feature: domain Description: PRK102 76 Location: 1333369-1333780 bp Feature: gene Location: 1333788-1335053 bp Feature: domain Description: umuC Location: 1333791-1335051 bp Feature: domain Description: umuC Location: 1333791-1335051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)