myRT

myRT report for GCA_000707145.2_ASM70714v2

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Seq: JNSV02000007.1 Vibrio parahaemolyticus strain CFSAN007438 VP3_S4_L001_R1_001_(paired)_contig_7, whole genome shotgun sequence (1325702 bp)
Overview 1 RT 1: 648529-655499 bp Neighborhood of RT #1 [648529, 657511] RVT-UG1 HSDR_N_2 Feature: gene Location: 648529-648771 bp Feature: gene Location: 648902-650476 bp Feature: gene Location: 650692-654537 bp Ori: OQT99950.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 651334-651853 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 651 334-651 853 bp Feature: gene Location: 654534-655019 bp Feature: gene Location: 655139-657511 bp Ori: OQT99952.1 Feature: domain Description: HSDR_N_2 Location: 655304-655499 bp Feature: domain Description: HSDR_N_2 Location: 655304-655499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, HSDR_N_2 (pfam13588)

Seq: JNSV02000004.1 Vibrio parahaemolyticus strain CFSAN007438 VP3_S4_L001_R1_001_(paired)_contig_4, whole genome shotgun sequence (741928 bp)
Overview 1 RT 1: 160914-169726 bp Neighborhood of RT #1 [160914, 169803] COG3547 RVT_N RVT-GII GIIM RVT_N RVT-GII RVT_1 PRK08310 YjbI YjbI Feature: gene Location: 160914-161186 bp Feature: gene Location: 162087-162488 bp Feature: domain Description: COG3547 Location: 162099-162486 bp Feature: domain Description: COG3547 Location: 162 099-162 486 bp Feature: gene Location: 162784-164256 bp Feature: domain Description: RVT_N Location: 162832-163075 bp Feature: domain Description: RVT_N Location: 162 832 -163075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163120-163747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16312 0-163747 bp Feature: domain Description: GIIM Note: maturase Location: 163813-164032 bp Feature: domain Description: GIIM Note: maturase Location: 163813-164032 bp Feature: gene Location: 164172-164369 bp Feature: gene Location: 164866-165117 bp Feature: gene Location: 165776-167268 bp Feature: domain Description: RVT_N Location: 165824-166064 bp Feature: domain Description: RVT_N Location: 16582 4-166064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166112-166739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166112 -166739 bp Feature: domain Description: RVT_1 Location: 167108-167258 bp Feature: domain Description: RVT_1 Location: 167108-1672 58 bp Feature: gene Location: 167859-169064 bp Ori: OQU02261.1 Feature: domain Description: PRK08310 Location: 167910-169050 bp Feature: domain Description: PRK08310 Location: 167910-169050 bp Feature: gene Location: 169138-169803 bp Ori: OQU02262.1 Feature: domain Description: YjbI Location: 169165-169450 bp Feature: domain Description: YjbI Location: 169165-169450 bp Feature: domain Description: YjbI Location: 169480-169726 bp Feature: domain Description: YjbI Location: 169480-16972 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RVT_1 (pfam00078), PRK08310 (amidase; Provisional), YjbI (COG2346)