myRT

myRT report for GCA_000707685.2_ASM70768v2

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Seq: JNTD02000016.1 Vibrio parahaemolyticus strain CFSAN007446 VP13_16, whole genome shotgun sequence (440182 bp)
Overview 1 RT 1: 151-11283 bp Neighborhood of RT #1 [151, 11294] HTH_Tnp_ISL3 DDE_Tnp_ISL3 HsdR RVT-UG1 DUF2384 Feature: gene Location: 151-1166 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 226-373 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 226-373 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 421-988 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 421 -988 bp Feature: gene Location: 1539-4487 bp Feature: domain Description: HsdR Location: 1575-4404 bp Feature: domain Description: HsdR Location: 1 575-4404 bp Feature: gene Location: 4557-8416 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 5244-5772 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 5244-5772 bp Feature: gene Location: 8870-10777 bp Feature: gene Location: 11055-11294 bp Ori: OQU35623.1 Feature: domain Description: DUF2384 Location: 11142-11283 bp Feature: domain Description: DUF2384 Location: 1 1 1 42-1 1 283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), HsdR (COG4096), RVT-UG1, DUF2384 (pfam09722)

Seq: JNTD02000002.1 Vibrio parahaemolyticus strain CFSAN007446 VP13_2, whole genome shotgun sequence (529308 bp)
Overview 1 RT 1: 341396-346281 bp Neighborhood of RT #1 [341396, 346508] TIGR02646 COG3950 RVT-Retrons AlpA COG5545 Feature: gene Location: 341396-342007 bp Ori: OQU41914.1 Feature: domain Description: TIGR02646 Location: 341501-341894 bp Feature: domain Description: TIGR02 646 Location: 341501-341894 bp Feature: gene Location: 342004-343632 bp Ori: OQU41915.1 Feature: domain Description: COG3950 Location: 342190-343609 bp Feature: domain Description: COG3950 Location: 342 190-343609 bp Feature: gene Location: 343638-344585 bp Ori: OQU41916.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 343752-344349 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 343752 -344349 bp Feature: gene Location: 345056-345256 bp Ori: OQU41917.1 Feature: domain Description: AlpA Location: 345065-345230 bp Feature: domain Description: AlpA Location: 345065-3452 30 bp Feature: gene Location: 345240-346508 bp Ori: OQU41918.1 Feature: domain Description: COG5545 Location: 345519-346281 bp Feature: domain Description: COG5545 Location: 345519-3462 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, AlpA (COG3311), COG5545 (Predicted P-loop ATPase and inactivated derivatives )