myRT

myRT report for GCA_000707725.2_ASM70772v2

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Seq: JNTF02000070.1 Vibrio parahaemolyticus strain CFSAN007448 VP15_70, whole genome shotgun sequence (2175 bp)
Overview 1 RT 1: 4-1364 bp Neighborhood of RT #1 [4, 1588] RVT_N RVT-GII GIIM Feature: gene Location: 4-200 bp Feature: gene Location: 116-1588 bp Feature: RT Description: RVT_N Location: 164-407 bp Feature: RT Description: RVT_N Location: 1 64-407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452-1 079 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 39-1 364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JNTF02000043.1 Vibrio parahaemolyticus strain CFSAN007448 VP15_43, whole genome shotgun sequence (62183 bp)
Overview 1 RT 1: 60043-61911 bp Neighborhood of RT #1 [60043, 62156] COG3950 SEL1 COG3950 RVT-Retrons Feature: gene Location: 60043-61197 bp Feature: domain Description: COG3950 Location: 60064-61168 bp Feature: domain Description: COG3950 Location: 60064-61168 bp Feature: gene Location: 61224-61658 bp Feature: domain Description: SEL1 Location: 61293-61368 bp Feature: domain Description: SEL1 Location: 612 93-61368 bp Feature: domain Description: COG3950 Location: 61407-61614 bp Feature: domain Description: COG3950 Location: 61407-61614 bp Feature: gene Location: 61659-62156 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61665-61911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61665-61911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), SEL1 (smart00671), RVT-Retrons

Seq: JNTF02000079.1 Vibrio parahaemolyticus strain CFSAN007448 VP15_79, whole genome shotgun sequence (7955 bp)
Overview 1 RT 1: 128-3014 bp Neighborhood of RT #1 [128, 3067] RVT-Retrons Phage_AlpA Feature: gene Location: 128-613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 233-545 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 3 -545 bp Feature: gene Location: 1283-2635 bp Feature: gene Location: 2843-3067 bp Feature: domain Description: Phage_AlpA Location: 2870-3014 bp Feature: domain Description: Phage_AlpA Location: 2870-3 014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons