myRT

myRT report for GCA_000708285.2_Genome_Assembly_for_Pedobacter_borealis_DSM19626

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Seq: JAUG01000045.1 Pedobacter borealis DSM 19626 Contig045, whole genome shotgun sequence (37293 bp)
Overview 1 RT 1: 3369-5863 bp Neighborhood of RT #1 [3369, 5863] Arm-DNA-bind_5 RVT-GII GIIM Feature: gene Location: 3369-3557 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3417-3531 bp Feature: domain Description: Arm-DNA-bind_5 Location: 341 7-3531 bp Feature: gene Location: 3605-3742 bp Feature: gene Location: 3767-5059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4031-4703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4031 -4703 bp Feature: domain Description: GIIM Note: maturase Location: 4787-4982 bp Feature: domain Description: GIIM Note: maturase Location: 4787-4982 bp Feature: gene Location: 5165-5500 bp Feature: gene Location: 5534-5863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), RVT-GII, GIIM (pfam08388)

Seq: JAUG01000055.1 Pedobacter borealis DSM 19626 Contig055, whole genome shotgun sequence (46564 bp)
Overview 1 RT 1: 2-2823 bp Neighborhood of RT #1 [2, 2837] RVT-GII RVT-GII GIIM PRK14532 Feature: gene Location: 2-205 bp Feature: gene Location: 358-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-604 bp Feature: gene Location: 702-1535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1065 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1359 bp Feature: domain Description: GIIM Note: maturase Location: 112 2 -1359 bp Feature: gene Location: 1801-1956 bp Feature: gene Location: 2262-2837 bp Feature: domain Description: PRK14532 Location: 2268-2823 bp Feature: domain Description: PRK14532 Location: 2 2 68-2 82 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK14532 (adenylate kinase; Provisional)

Seq: JAUG01000064.1 Pedobacter borealis DSM 19626 Contig064, whole genome shotgun sequence (55138 bp)
Overview 1 RT 1: 44689-50070 bp Neighborhood of RT #1 [44689, 50174] UbiG RVT-GII GIIM PRK11186 TPR_12 TPR Feature: gene Location: 44689-44889 bp Feature: gene Location: 44978-45376 bp Feature: domain Description: UbiG Location: 45140-45287 bp Feature: domain Description: UbiG Location: 45140-45287 bp Feature: gene Location: 45548-46825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45758-46376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45758-463 76 bp Feature: domain Description: GIIM Note: maturase Location: 46439-46649 bp Feature: domain Description: GIIM Note: maturase Location: 4643 9-46649 bp Feature: gene Location: 47050-49239 bp Feature: domain Description: PRK11186 Location: 47098-49192 bp Feature: domain Description: PRK11186 Location: 47098-49192 bp Feature: gene Location: 49485-50174 bp Feature: domain Description: TPR_12 Location: 49647-49815 bp Feature: domain Description: TPR_12 Location: 49647-49815 bp Feature: domain Description: TPR Location: 49875-50070 bp Feature: domain Description: TPR Location: 49875-50070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiG (TIGR01983), RVT-GII, GIIM (pfam08388), PRK11186 (carboxy terminal-processing peptidase), TPR_12 (pfam13424), TPR (smart00028)