myRT

myRT report for GCA_000708505.1_BacMEV2011_1.0

Download annotations/find similar RTs

Seq: JJRY01000003.1 Bacillus azotoformans MEV2011 M670_Contig0002.3, whole genome shotgun sequence (377634 bp)
Overview 1 RT 1: 172342-181163 bp Neighborhood of RT #1 [172342, 181171] PRK13922 PRK13927 RVT-GII RVT-GII Intron_maturas2 HNHc RadC PRK00148 Feature: gene Location: 172342-173226 bp Ori: KEF39439.1 Feature: domain Description: PRK13922 Location: 172345-173173 bp Feature: domain Description: PRK1 3922 Location: 1 72345-1 731 73 bp Feature: gene Location: 173244-174284 bp Ori: KEF39440.1 Feature: domain Description: PRK13927 Location: 173262-174252 bp Feature: domain Description: PRK1 3927 Location: 1 73262-1 74252 bp Feature: gene Location: 174686-176557 bp Ori: KEF39441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175007-175712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75007-1 7571 2 bp Feature: gene Location: 177530-179344 bp Ori: KEF39442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177794-178625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 77794-1 78625 bp Feature: domain Description: Intron_maturas2 Location: 178703-179054 bp Feature: domain Description: Intron_maturas2 Location: 1 78703-1 79054 bp Feature: domain Description: HNHc Note: nucleases Location: 179141-179318 bp Feature: domain Description: HNHc Note: nucleases Location: 1 791 41 -1 7931 8 bp Feature: gene Location: 179945-180442 bp Ori: KEF39443.1 Feature: domain Description: RadC Location: 179969-180437 bp Feature: domain Description: RadC Location: 1 79969-1 80437 bp Feature: gene Location: 180653-181171 bp Ori: KEF39444.1 Feature: domain Description: PRK00148 Location: 180656-181163 bp Feature: domain Description: PRK001 48 Location: 1 80656-1 81 1 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RadC (pfam04002), PRK00148 (Maf-like protein; Reviewed)

Seq: JJRY01000023.1 Bacillus azotoformans MEV2011 M670_Contig0024.23, whole genome shotgun sequence (76635 bp)
Overview 1 RT 1: 67355-75484 bp Neighborhood of RT #1 [67355, 75546] PRK12435 PRK11883 RVT-GII GIIM SSL2 RhaT Feature: gene Location: 67355-68296 bp Ori: KEF36719.1 Feature: domain Description: PRK12435 Location: 67364-68285 bp Feature: domain Description: PRK12 435 Location: 67364-682 85 bp Feature: gene Location: 68299-69720 bp Ori: KEF36720.1 Feature: domain Description: PRK11883 Location: 68317-69706 bp Feature: domain Description: PRK11883 Location: 68317-69706 bp Feature: gene Location: 70806-72065 bp Ori: KEF36721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71037-71661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71037-71661 bp Feature: domain Description: GIIM Note: maturase Location: 71757-71970 bp Feature: domain Description: GIIM Note: maturase Location: 71757-71970 bp Feature: gene Location: 72278-74329 bp Ori: KEF36722.1 Feature: domain Description: SSL2 Location: 72536-73580 bp Feature: domain Description: SSL2 Location: 72 536-73580 bp Feature: gene Location: 74617-75546 bp Ori: KEF36723.1 Feature: domain Description: RhaT Location: 74641-75484 bp Feature: domain Description: RhaT Location: 74641-75484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12435 (ferrochelatase; Provisional), PRK11883 (protoporphyrinogen oxidase; Reviewed), RVT-GII, GIIM (pfam08388), SSL2 (COG1061), RhaT (TIGR00776)

Seq: JJRY01000014.1 Bacillus azotoformans MEV2011 M670_Contig0033.14, whole genome shotgun sequence (105000 bp)
Overview 1 RT 1: 1-3962 bp Neighborhood of RT #1 [1, 4009] RVT-CRISPR-like RVT-GII HTH_23 COG4584 PRK06526 Feature: gene Location: 1-258 bp Ori: KEF37428.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 16-181 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 16-181 bp Feature: gene Location: 227-1030 bp Ori: KEF37429.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557-1016 bp Feature: gene Location: 1705-3246 bp Ori: KEF37430.1 Feature: domain Description: HTH_23 Location: 1714-1843 bp Feature: domain Description: HTH_23 Location: 1714-1843 bp Feature: domain Description: COG4584 Location: 2035-2608 bp Feature: domain Description: COG4584 Location: 203 5-2608 bp Feature: gene Location: 3239-4009 bp Ori: KEF37431.1 Feature: domain Description: PRK06526 Location: 3269-3962 bp Feature: domain Description: PRK06526 Location: 3 269-3 962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RVT-GII, HTH_23 (pfam13384), COG4584 (Transposase ), PRK06526 (transposase; Provisional)

Seq: JJRY01000009.1 Bacillus azotoformans MEV2011 M670_Contig0004.9, whole genome shotgun sequence (172488 bp)
Overview 1 RT 1: 66845-71005 bp 2 RT 2: 148722-157882 bp Neighborhood of RT #1 [66845, 71034] RVT-GII RVT-GII GIIM spore_yqfC spore_yqfD Neighborhood of RT #2 [148722, 158082] AcrB T_den_put_tspse RVT-GII GIIM RVT-GII GIIM YhfH RNaseZ_short-form-like_MBL-fold Feature: gene Location: 66845-67405 bp Feature: gene Location: 67630-67842 bp Feature: gene Location: 68077-68700 bp Ori: KEF38140.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68344-68686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6834 4 -68686 bp Feature: gene Location: 68678-69403 bp Ori: KEF38141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68693-68966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68693-68966 bp Feature: domain Description: GIIM Note: maturase Location: 69017-69245 bp Feature: domain Description: GIIM Note: maturase Location: 69017-6924 5 bp Feature: gene Location: 69539-69829 bp Ori: KEF38142.1 Feature: domain Description: spore_yqfC Location: 69563-69812 bp Feature: domain Description: spore_yqfC Location: 69563-69812 bp Feature: gene Location: 69847-71034 bp Ori: KEF38143.1 Feature: domain Description: spore_yqfD Location: 69862-71005 bp Feature: domain Description: spore_yqfD Location: 69862-71005 bp Feature: gene Location: 148722-152000 bp Ori: KEF38226.1 Feature: domain Description: AcrB Location: 148785-151926 bp Feature: domain Description: AcrB Location: 14 8785-151926 bp Feature: gene Location: 152178-152786 bp Ori: KEF38227.1 Feature: domain Description: T_den_put_tspse Location: 152181-152760 bp Feature: domain Description: T_den_put_tspse Location: 152181-152760 bp Feature: gene Location: 154024-155283 bp Ori: KEF38228.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154255-154879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 255-154 879 bp Feature: domain Description: GIIM Note: maturase Location: 154975-155188 bp Feature: domain Description: GIIM Note: maturase Location: 154 975-155188 bp Feature: gene Location: 155575-156831 bp Ori: KEF38229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155770-156385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155770-156385 bp Feature: domain Description: GIIM Note: maturase Location: 156436-156646 bp Feature: domain Description: GIIM Note: maturase Location: 1564 36-15664 6 bp Feature: gene Location: 157054-157185 bp Ori: KEF38230.1 Feature: domain Description: YhfH Location: 157063-157168 bp Feature: domain Description: YhfH Location: 157063-157168 bp Feature: gene Location: 157354-158082 bp Ori: KEF38231.1 Feature: domain Description: RNaseZ_short-form-like_MBL-fold Location: 157360-157882 bp Feature: domain Description: RNaseZ_short-form-like_MBL-fold Location: 157360-157882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), spore_yqfC (TIGR02856), spore_yqfD (TIGR02876), AcrB (COG0841), T_den_put_tspse (TIGR01784), YhfH (pfam14149), RNaseZ_short-form-like_MBL-fold (cd07716)

Seq: JJRY01000030.1 Bacillus azotoformans MEV2011 M670_Contig0008.30, whole genome shotgun sequence (42351 bp)
Overview 1 RT 1: 38177-42351 bp Neighborhood of RT #1 [38177, 42351] DUF3055 GdhA RVT-GII GIIM Feature: gene Location: 38177-38464 bp Ori: KEF36303.1 Feature: domain Description: DUF3055 Location: 38195-38423 bp Feature: domain Description: DUF305 5 Location: 38195 -38423 bp Feature: gene Location: 38482-39777 bp Ori: KEF36304.1 Feature: domain Description: GdhA Location: 38563-39769 bp Feature: domain Description: GdhA Location: 385 63-39769 bp Feature: gene Location: 40044-41579 bp Ori: KEF36305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40374-40995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40374-40995 bp Feature: domain Description: GIIM Note: maturase Location: 41070-41184 bp Feature: domain Description: GIIM Note: maturase Location: 41070-41184 bp Feature: gene Location: 41714-42351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3055 (pfam11256), GdhA (COG0334), RVT-GII, GIIM (pfam08388)

Seq: JJRY01000010.1 Bacillus azotoformans MEV2011 M670_Contig0029.10, whole genome shotgun sequence (145978 bp)
Overview 1 RT 1: 71566-77532 bp 2 RT 2: 131933-138248 bp Neighborhood of RT #1 [71566, 77561] HTH_23 COG4584 PRK06526 RVT-GII Cu_amine_oxidN1 Cu_amine_oxidN1 OmpR Neighborhood of RT #2 [131933, 138436] RVT-Retrons Peptidase_C14 AIPR Feature: gene Location: 71566-73107 bp Ori: KEF37995.1 Feature: domain Description: HTH_23 Location: 71575-71704 bp Feature: domain Description: HTH_23 Location: 71575-71704 bp Feature: domain Description: COG4584 Location: 71896-72469 bp Feature: domain Description: COG4584 Location: 71896 -7246 9 bp Feature: gene Location: 73100-73870 bp Ori: KEF37996.1 Feature: domain Description: PRK06526 Location: 73127-73823 bp Feature: domain Description: PRK06 526 Location: 73127-73823 bp Feature: gene Location: 73802-74431 bp Ori: KEF37997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74240-74336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74240-74336 bp Feature: gene Location: 74488-76467 bp Ori: KEF37998.1 Feature: domain Description: Cu_amine_oxidN1 Location: 74662-74938 bp Feature: domain Description: Cu_amine_oxidN1 Location: 746 6 2-74938 bp Feature: domain Description: Cu_amine_oxidN1 Location: 75031-75307 bp Feature: domain Description: Cu_amine_oxidN1 Location: 75031-75307 bp Feature: gene Location: 76857-77561 bp Ori: KEF37999.1 Feature: domain Description: OmpR Location: 76872-77532 bp Feature: domain Description: OmpR Location: 76 872-77532 bp Feature: gene Location: 131933-133213 bp Feature: gene Location: 133439-133714 bp Feature: gene Location: 133825-134523 bp Ori: KEF38051.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 133834-134269 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 133834-13426 9 bp Feature: gene Location: 134946-136511 bp Ori: KEF38052.1 Feature: domain Description: Peptidase_C14 Location: 134961-135504 bp Feature: domain Description: Peptidase_C14 Location: 13496 1-135504 bp Feature: gene Location: 136610-138436 bp Ori: KEF38053.1 Feature: domain Description: AIPR Location: 137447-138248 bp Feature: domain Description: AIPR Location: 137447-138248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), COG4584 (Transposase ), PRK06526 (transposase; Provisional), RVT-GII, Cu_amine_oxidN1 (pfam07833), OmpR (COG0745), RVT-Retrons, Peptidase_C14 (pfam00656), AIPR (pfam10592)

Seq: JJRY01000047.1 Bacillus azotoformans MEV2011 M670_Contig0020.47, whole genome shotgun sequence (10429 bp)
Overview 1 RT 1: 626-5397 bp Neighborhood of RT #1 [626, 5397] AraJ RVT-GII GIIM NTP-PPase_COG4997 Feature: gene Location: 626-1807 bp Ori: KEF35842.1 Feature: domain Description: AraJ Location: 629-1757 bp Feature: domain Description: AraJ Location: 629-17 57 bp Feature: gene Location: 2102-2314 bp Feature: gene Location: 2549-3772 bp Ori: KEF35844.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2714-3335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 14-3335 bp Feature: domain Description: GIIM Note: maturase Location: 3386-3614 bp Feature: domain Description: GIIM Note: maturase Location: 3386-3614 bp Feature: gene Location: 3953-4294 bp Ori: KEF35845.1 Feature: domain Description: NTP-PPase_COG4997 Location: 3965-4244 bp Feature: domain Description: NTP-PPase_COG4997 Location: 3965-4244 bp Feature: gene Location: 4693-5397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraJ (COG2814), RVT-GII, GIIM (pfam08388), NTP-PPase_COG4997 (cd11532)

Seq: JJRY01000005.1 Bacillus azotoformans MEV2011 M670_Contig0017.5, whole genome shotgun sequence (199280 bp)
Overview 1 RT 1: 338-4694 bp Neighborhood of RT #1 [338, 4933] RVT-GII GIIM GIIM fabZ Cu_amine_oxidN1 Feature: gene Location: 338-1396 bp Ori: KEF38833.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-8 12 bp Feature: domain Description: GIIM Note: maturase Location: 887-1001 bp Feature: domain Description: GIIM Note: maturase Location: 8 8 7-1001 bp Feature: domain Description: GIIM Note: maturase Location: 1082-1175 bp Feature: domain Description: GIIM Note: maturase Location: 108 2-1175 bp Feature: gene Location: 1597-2028 bp Ori: KEF38834.1 Feature: domain Description: fabZ Location: 1600-2017 bp Feature: domain Description: fabZ Location: 1600-2017 bp Feature: gene Location: 2642-4933 bp Ori: KEF38835.1 Feature: domain Description: Cu_amine_oxidN1 Location: 4568-4694 bp Feature: domain Description: Cu_amine_oxidN1 Location: 4568 -4694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), fabZ (TIGR01750), Cu_amine_oxidN1 (pfam07833)