myRT

myRT report for GCA_000709065.1_assembly_v1_of_C._metallidurans_NE12

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Seq: JFZF01000026.1 Cupriavidus metallidurans strain NE12 contig00028, whole genome shotgun sequence (63810 bp)
Overview 1 RT 1: 6756-12597 bp Neighborhood of RT #1 [6756, 12597] IS285 RVT-GII GIIM RVT_N RVT-GII YkfC Feature: gene Location: 6756-6890 bp Feature: gene Location: 7147-8415 bp Feature: domain Description: IS285 Location: 7228-8401 bp Feature: domain Description: IS285 Location: 7228-8401 bp Feature: gene Location: 8428-9888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8908-9526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8908-9526 bp Feature: domain Description: GIIM Note: maturase Location: 9583-9784 bp Feature: domain Description: GIIM Note: maturase Location: 9583-9784 bp Feature: gene Location: 9897-11786 bp Feature: RT Description: RVT_N Location: 10353-10596 bp Feature: RT Description: RVT_N Location: 1 0353-1 0596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10641-11283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0641 -1 1 283 bp Feature: domain Description: YkfC Location: 11367-11568 bp Feature: domain Description: YkfC Location: 1 1 367-1 1 568 bp Feature: gene Location: 12036-12332 bp Feature: gene Location: 12385-12597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), YkfC (COG3344)

Seq: JFZF01000028.1 Cupriavidus metallidurans strain NE12 contig00030, whole genome shotgun sequence (158439 bp)
Overview 1 RT 1: 12842-19077 bp Neighborhood of RT #1 [12842, 19088] Xcc1710_like RVT_N RVT-GII GIIM HNHc PRK09265 PRK06349 Feature: gene Location: 12842-13222 bp Feature: domain Description: Xcc1710_like Location: 12881-13205 bp Feature: domain Description: Xcc1710_like Location: 12 881-132 05 bp Feature: gene Location: 13969-14328 bp Feature: gene Location: 14570-16294 bp Feature: RT Description: RVT_N Location: 14627-14870 bp Feature: RT Description: RVT_N Location: 1462 7-14870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14915-15563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14915-15563 bp Feature: domain Description: GIIM Note: maturase Location: 15617-15848 bp Feature: domain Description: GIIM Note: maturase Location: 15617-15848 bp Feature: domain Description: HNHc Note: nucleases Location: 16073-16232 bp Feature: domain Description: HNHc Note: nucleases Location: 16073-162 32 bp Feature: gene Location: 16348-17727 bp Feature: domain Description: PRK09265 Location: 16504-17710 bp Feature: domain Description: PRK092 65 Location: 16504-17710 bp Feature: gene Location: 17778-19088 bp Feature: domain Description: PRK06349 Location: 17781-19077 bp Feature: domain Description: PRK06349 Location: 17781-19077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Xcc1710_like (cd05560), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09265 (aminotransferase AlaT; Validated), PRK06349 (homoserine dehydrogenase; Provisional)

Seq: JFZF01000078.1 Cupriavidus metallidurans strain NE12 contig00082, whole genome shotgun sequence (70183 bp)
Overview 1 RT 1: 16398-26138 bp Neighborhood of RT #1 [16398, 26152] ileS PRK05627 RVT_N RVT-GII GIIM HNHc BaeS PRK15347 CitB Feature: gene Location: 16398-19277 bp Feature: domain Description: ileS Location: 16431-19245 bp Feature: domain Description: ileS Location: 1643 1-19245 bp Feature: gene Location: 19397-20434 bp Feature: domain Description: PRK05627 Location: 19460-20372 bp Feature: domain Description: PRK05627 Location: 19460-203 72 bp Feature: gene Location: 20504-22204 bp Feature: RT Description: RVT_N Location: 20561-20804 bp Feature: RT Description: RVT_N Location: 20561-20804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20849-21497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20849-21497 bp Feature: domain Description: GIIM Note: maturase Location: 21554-21782 bp Feature: domain Description: GIIM Note: maturase Location: 21554-21782 bp Feature: domain Description: HNHc Note: nucleases Location: 22007-22166 bp Feature: domain Description: HNHc Note: nucleases Location: 22007-22166 bp Feature: gene Location: 23637-25427 bp Feature: domain Description: BaeS Location: 23880-24987 bp Feature: domain Description: BaeS Location: 23 880-24987 bp Feature: domain Description: PRK15347 Location: 25071-25395 bp Feature: domain Description: PRK153 47 Location: 25071-253 95 bp Feature: gene Location: 25493-26152 bp Feature: domain Description: CitB Location: 25517-26138 bp Feature: domain Description: CitB Location: 25517-2613 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ileS (TIGR00392), PRK05627 (bifunctional riboflavin kinase/FAD synthetase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), BaeS (COG0642), PRK15347 (two component system sensor kinase), CitB (TIGR02484)

Seq: JFZF01000083.1 Cupriavidus metallidurans strain NE12 contig00089, whole genome shotgun sequence (41297 bp)
Overview 1 RT 1: 22644-28377 bp Neighborhood of RT #1 [22644, 28377] SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 22644-23180 bp Feature: gene Location: 23239-24399 bp Feature: domain Description: SF2_C_SNF Location: 23857-24235 bp Feature: domain Description: SF2_C_SNF Location: 23857-24 235 bp Feature: gene Location: 24566-26284 bp Feature: RT Description: RVT_N Location: 24623-24860 bp Feature: RT Description: RVT_N Location: 24 623-24 860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24911-25562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 911-25562 bp Feature: domain Description: GIIM Note: maturase Location: 25616-25847 bp Feature: domain Description: GIIM Note: maturase Location: 25616-2584 7 bp Feature: domain Description: HNHc Note: nucleases Location: 26081-26237 bp Feature: domain Description: HNHc Note: nucleases Location: 26081-26237 bp Feature: gene Location: 26881-27936 bp Feature: domain Description: DEXHc_Snf Location: 27100-27361 bp Feature: domain Description: DEXHc_Snf Location: 27100-27361 bp Feature: gene Location: 28072-28377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)