myRT

myRT report for GCA_000709185.1_VAKP278v01

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Seq: JMSW01000001.1 Klebsiella pneumoniae VAKPC278 ctg7180000000007, whole genome shotgun sequence (5286856 bp)
Overview 1 RT 1: 47230-52778 bp 2 RT 2: 432566-437984 bp 3 RT 3: 1728533-1735016 bp 4 RT 4: 4883759-4887166 bp Neighborhood of RT #1 [47230, 52804] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [432566, 437986] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [1728533, 1735018] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #4 [4883759, 4887267] Laminin_G_3 RVT-GII PRK10276 PRK10276 Feature: gene Location: 47230-47793 bp Feature: domain Description: YbjK Location: 47236-47773 bp Feature: domain Description: YbjK Location: 47236-47773 bp Feature: gene Location: 47916-48968 bp Feature: domain Description: int Location: 47919-48918 bp Feature: domain Description: int Location: 4791 9-4891 8 bp Feature: gene Location: 49384-50871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49789-50479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49789-50479 bp Feature: gene Location: 50970-51914 bp Feature: gene Location: 51926-52804 bp Feature: domain Description: Phage_CI_repr Location: 51953-52136 bp Feature: domain Description: Phage_CI_repr Location: 51 953-521 36 bp Feature: domain Description: Phage_CI_repr Location: 52265-52457 bp Feature: domain Description: Phage_CI_repr Location: 52265-52457 bp Feature: domain Description: Phage_CI_C Location: 52484-52778 bp Feature: domain Description: Phage_CI_C Location: 52484-52778 bp Feature: gene Location: 432566-433705 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 432749-433649 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 432749-433649 bp Feature: gene Location: 433876-434118 bp Feature: domain Description: DinI Location: 433927-434107 bp Feature: domain Description: DinI Location: 433927-4341 07 bp Feature: gene Location: 434733-436220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435138-435828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4351 38-435828 bp Feature: gene Location: 436299-436718 bp Feature: domain Description: PRK10276 Location: 436302-436713 bp Feature: domain Description: PRK1 0276 Location: 436302-43671 3 bp Feature: gene Location: 436721-437986 bp Feature: domain Description: umuC Location: 436724-437984 bp Feature: domain Description: umuC Location: 436724-437984 bp Feature: gene Location: 1728533-1729591 bp Feature: domain Description: YccC Location: 1728539-1729577 bp Feature: domain Description: YccC Location: 1 728539-1 729577 bp Feature: gene Location: 1729690-1730163 bp Feature: domain Description: PRK10016 Location: 1729693-1730152 bp Feature: domain Description: PRK1 001 6 Location: 1 729693-1 7301 52 bp Feature: gene Location: 1730245-1731732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1730650-1731340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 730650-1 731 340 bp Feature: gene Location: 1732250-1733413 bp Feature: domain Description: dacD Location: 1732253-1733408 bp Feature: domain Description: dacD Location: 1 732253-1 733408 bp Feature: gene Location: 1733594-1735018 bp Feature: domain Description: SbcB Location: 1733600-1735016 bp Feature: domain Description: SbcB Location: 1 733600-1 73501 6 bp Feature: gene Location: 4883759-4884490 bp Feature: domain Description: Laminin_G_3 Location: 4884080-4884434 bp Feature: domain Description: Laminin_G_3 Location: 4884080-4884434 bp Feature: gene Location: 4884487-4884696 bp Feature: gene Location: 4885146-4886633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4885551-4886241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4885551 -4886241 bp Feature: gene Location: 4886711-4886950 bp Feature: gene Location: 4886950-4887267 bp Feature: domain Description: PRK10276 Location: 4886956-4887070 bp Feature: domain Description: PRK1 0276 Location: 4886956-4887070 bp Feature: domain Description: PRK10276 Location: 4887097-4887166 bp Feature: domain Description: PRK1 0276 Location: 4887097-48871 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289)
PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925), Laminin_G_3 (pfam13385)

Seq: JMSW01000002.1 Klebsiella pneumoniae VAKPC278 plasmid pVAKPC278-138, complete sequence, whole genome shotgun sequence (137733 bp)
Overview 1 RT 1: 74369-79372 bp Neighborhood of RT #1 [74369, 79374] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 74369-75640 bp Feature: domain Description: umuC Location: 74372-75632 bp Feature: domain Description: umuC Location: 74372 -75632 bp Feature: gene Location: 75640-76071 bp Feature: domain Description: PRK10276 Location: 75691-76054 bp Feature: domain Description: PRK102 76 Location: 75691-76054 bp Feature: gene Location: 76477-77964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76882-77572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76882 -77572 bp Feature: gene Location: 78198-78428 bp Feature: gene Location: 78949-79374 bp Feature: domain Description: Antirestrict Location: 79084-79372 bp Feature: domain Description: Antirestrict Location: 79084-79372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)