myRT

myRT report for GCA_000710035.1_PA2665v2

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Seq: JMJJ01000012.1 Pantoea ananatis LMG 2665 Contig12, whole genome shotgun sequence (106375 bp)
Overview 1 RT 1: 1292-7086 bp Neighborhood of RT #1 [1292, 7127] SIR2_2 YjgR YjgR RVT-Retrons ABC_ATPase PHA02518 Feature: gene Location: 1292-1705 bp Feature: domain Description: SIR2_2 Location: 1379-1631 bp Feature: domain Description: SIR2_2 Location: 1 379-1 631 bp Feature: gene Location: 1702-3516 bp Feature: domain Description: YjgR Location: 2146-2386 bp Feature: domain Description: YjgR Location: 21 46-2386 bp Feature: domain Description: YjgR Location: 3052-3451 bp Feature: domain Description: YjgR Location: 3052-3451 bp Feature: gene Location: 3870-4841 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3999-4569 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3999-4569 bp Feature: gene Location: 4838-6166 bp Feature: domain Description: ABC_ATPase Location: 4883-5573 bp Feature: domain Description: ABC_ATPase Location: 4883-5573 bp Feature: gene Location: 6489-7127 bp Feature: domain Description: PHA02518 Location: 6501-7086 bp Feature: domain Description: PHA0251 8 Location: 6501 -7086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-Retrons, ABC_ATPase (pfam09818), PHA02518 (ParA-like protein; Provisional)

Seq: JMJJ01000016.1 Pantoea ananatis LMG 2665 Contig16, whole genome shotgun sequence (54278 bp)
Overview 1 RT 1: 44479-47538 bp Neighborhood of RT #1 [44479, 47540] RVT-UG4 FimA PRK15287 Feature: gene Location: 44479-44907 bp Feature: gene Location: 45081-45266 bp Feature: gene Location: 45481-46461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 45829-46276 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4582 9-462 76 bp Feature: gene Location: 46484-47029 bp Feature: domain Description: FimA Location: 46523-47027 bp Feature: domain Description: FimA Location: 4652 3-4702 7 bp Feature: gene Location: 47040-47540 bp Feature: domain Description: PRK15287 Location: 47088-47538 bp Feature: domain Description: PRK152 87 Location: 47088-47538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, FimA (pfam16970), PRK15287 (fimbrial minor subunit StfF)