myRT

myRT report for GCA_000710505.1_Plagard2.0

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Seq: CM002803.1 Planktothrix agardhii NIVA-CYA 126/8 chromosome, whole genome shotgun sequence (4785602 bp)
Overview 1 RT 1: 715497-722650 bp 2 RT 2: 1416568-1422416 bp 3 RT 3: 1597009-1604042 bp 4 RT 4: 3676584-3685042 bp 5 RT 5: 3822876-3829789 bp Neighborhood of RT #1 [715497, 722650] TPR TPR CpeT RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [1416568, 1422571] PLN02770 RVT_N RVT-GII GIIM HNHc Era_like DUF697 Neighborhood of RT #3 [1597009, 1604050] GT4_PimA-like Sulfotransfer_2 Sulfotransfer_2 RVT-GII GIIM HNHc Sulfotransfer_3 COG1453 Neighborhood of RT #4 [3676584, 3685545] COG3825 YfmG Avd_like RVT-DGRs lpxB marine_srt_targ Neighborhood of RT #5 [3822876, 3829845] LAGLIDADG_2 NrdF RVT_N RVT-GII GIIM HNHc NrdF ATP-cone RNR_I Feature: gene Location: 715497-716900 bp Feature: domain Description: TPR Location: 716076-716445 bp Feature: domain Description: TPR Location: 71 6076-71 6445 bp Feature: domain Description: TPR Location: 716505-716820 bp Feature: domain Description: TPR Location: 71 6505-71 6820 bp Feature: gene Location: 717332-717922 bp Feature: domain Description: CpeT Location: 717362-717890 bp Feature: domain Description: CpeT Location: 71 7362-71 7890 bp Feature: gene Location: 718603-720381 bp Feature: RT Description: RVT_N Location: 718648-718894 bp Feature: RT Description: RVT_N Location: 71 8648-71 8894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 719002-719635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 9002-71 9635 bp Feature: domain Description: GIIM Note: maturase Location: 719734-719935 bp Feature: domain Description: GIIM Note: maturase Location: 71 9734-71 9935 bp Feature: domain Description: HNHc Note: nucleases Location: 720145-720304 bp Feature: domain Description: HNHc Note: nucleases Location: 7201 45-720304 bp Feature: gene Location: 721744-722172 bp Feature: gene Location: 722177-722650 bp Feature: gene Location: 1416568-1417218 bp Feature: domain Description: PLN02770 Location: 1416574-1417195 bp Feature: domain Description: PLN02770 Location: 1 41 6574-1 41 71 95 bp Feature: gene Location: 1418197-1418508 bp Feature: RT Description: RVT_N Location: 1418239-1418461 bp Feature: RT Description: RVT_N Location: 1 41 8239-1 41 8461 bp Feature: gene Location: 1418529-1419977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1418604-1419237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 8604-1 41 9237 bp Feature: domain Description: GIIM Note: maturase Location: 1419336-1419537 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 9336-1 41 9537 bp Feature: domain Description: HNHc Note: nucleases Location: 1419756-1419906 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 9756-1 41 9906 bp Feature: gene Location: 1420033-1420722 bp Feature: gene Location: 1420973-1422571 bp Feature: domain Description: Era_like Location: 1421372-1421852 bp Feature: domain Description: Era_like Location: 1 421 372-1 421 852 bp Feature: domain Description: DUF697 Location: 1421942-1422416 bp Feature: domain Description: DUF697 Location: 1 421 942-1 42241 6 bp Feature: gene Location: 1597009-1598265 bp Feature: domain Description: GT4_PimA-like Location: 1597060-1598227 bp Feature: domain Description: GT4_PimA-like Location: 1 597060-1 598227 bp Feature: gene Location: 1598493-1599182 bp Feature: domain Description: Sulfotransfer_2 Location: 1598499-1598853 bp Feature: domain Description: Sulfotransfer_2 Location: 1 598499-1 598853 bp Feature: domain Description: Sulfotransfer_2 Location: 1598976-1599177 bp Feature: domain Description: Sulfotransfer_2 Location: 1 598976-1 5991 77 bp Feature: gene Location: 1600424-1601710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1600445-1600970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 600445-1 600970 bp Feature: domain Description: GIIM Note: maturase Location: 1601069-1601294 bp Feature: domain Description: GIIM Note: maturase Location: 1 601 069-1 601 294 bp Feature: domain Description: HNHc Note: nucleases Location: 1601489-1601639 bp Feature: domain Description: HNHc Note: nucleases Location: 1 601 489-1 601 639 bp Feature: gene Location: 1602050-1602826 bp Feature: domain Description: Sulfotransfer_3 Location: 1602209-1602626 bp Feature: domain Description: Sulfotransfer_3 Location: 1 602209-1 602626 bp Feature: gene Location: 1602890-1604050 bp Feature: domain Description: COG1453 Location: 1602893-1604042 bp Feature: domain Description: COG1 453 Location: 1 602893-1 604042 bp Feature: gene Location: 3676584-3679664 bp Feature: domain Description: COG3825 Location: 3676965-3677631 bp Feature: domain Description: COG3825 Location: 3676965-3677631 bp Feature: domain Description: YfmG Location: 3678588-3679629 bp Feature: domain Description: YfmG Location: 3678588-3679629 bp Feature: gene Location: 3679870-3680130 bp Feature: domain Description: Avd_like Location: 3679876-3680104 bp Feature: domain Description: Avd_like Location: 3679876-36801 04 bp Feature: gene Location: 3680127-3681185 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3680331-3681039 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3680331 -3681 039 bp Feature: gene Location: 3681542-3682762 bp Feature: domain Description: lpxB Location: 3681566-3682733 bp Feature: domain Description: lpxB Location: 3681 566-3682733 bp Feature: gene Location: 3683038-3685545 bp Feature: domain Description: marine_srt_targ Location: 3683281-3685042 bp Feature: domain Description: marine_srt_targ Location: 3683281 -3685042 bp Feature: gene Location: 3822876-3823475 bp Feature: domain Description: LAGLIDADG_2 Location: 3822918-3823407 bp Feature: domain Description: LAGLIDADG_2 Location: 382291 8-3823407 bp Feature: gene Location: 3823690-3823974 bp Feature: domain Description: NrdF Location: 3823696-3823972 bp Feature: domain Description: NrdF Location: 3823696-3823972 bp Feature: gene Location: 3824576-3826312 bp Feature: RT Description: RVT_N Location: 3824615-3824861 bp Feature: RT Description: RVT_N Location: 382461 5-3824861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3824903-3825572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3824903-3825572 bp Feature: domain Description: GIIM Note: maturase Location: 3825671-3825872 bp Feature: domain Description: GIIM Note: maturase Location: 3825671 -3825872 bp Feature: domain Description: HNHc Note: nucleases Location: 3826091-3826241 bp Feature: domain Description: HNHc Note: nucleases Location: 3826091 -3826241 bp Feature: gene Location: 3827279-3827542 bp Feature: domain Description: NrdF Location: 3827396-3827537 bp Feature: domain Description: NrdF Location: 3827396-3827537 bp Feature: gene Location: 3827581-3829845 bp Feature: domain Description: ATP-cone Location: 3827635-3827887 bp Feature: domain Description: ATP-cone Location: 3827635-3827887 bp Feature: domain Description: RNR_I Location: 3828106-3829789 bp Feature: domain Description: RNR_I Location: 38281 06-3829789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), CpeT (pfam06206), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PLN02770 (haloacid dehalogenase-like hydrolase family protein), Era_like (cd00880), DUF697 (pfam05128), GT4_PimA-like (cd03801)
Sulfotransfer_2 (pfam03567), Sulfotransfer_3 (pfam13469), COG1453 (Predicted oxidoreductase of the aldo/keto reductase family ), COG3825 (CoxE;Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain ), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, lpxB (TIGR00215), marine_srt_targ (TIGR03788), LAGLIDADG_2 (pfam03161)
NrdF (COG0208), ATP-cone (pfam03477), RNR_I (cd01679)