myRT

myRT report for GCA_000711555.1_ASM71155v1

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Seq: JONC01000018.1 (35519 bp)
Overview 1 RT 1: 29919-34947 bp Neighborhood of RT #1 [29919, 34979] PinE RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 29919-30476 bp Ori: KEJ66948.1 Gene: tnpR Feature: domain Description: PinE Location: 29922-30471 bp Feature: domain Description: PinE Location: 29922-30471 bp Feature: gene Location: 30576-30977 bp Feature: gene Location: 31271-32536 bp Ori: KEJ66950.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31592-32210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 592-3221 0 bp Feature: domain Description: GIIM Note: maturase Location: 32258-32438 bp Feature: domain Description: GIIM Note: maturase Location: 32258-32438 bp Feature: gene Location: 33039-34652 bp Ori: KEJ66951.1 Feature: domain Description: LZ_Tnp_IS66 Location: 33219-33429 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3321 9-33429 bp Feature: domain Description: zf-IS66 Location: 33453-33585 bp Feature: domain Description: zf-IS66 Location: 33453-33585 bp Feature: domain Description: DDE_Tnp_IS66 Location: 33630-34497 bp Feature: domain Description: DDE_Tnp_IS66 Location: 33630-34497 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 34521-34629 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 34521 -34629 bp Feature: gene Location: 34683-34979 bp Ori: KEJ66952.1 Feature: domain Description: TnpB_IS66 Location: 34686-34947 bp Feature: domain Description: TnpB_IS66 Location: 34686-34947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: JONC01000087.1 (29161 bp)
Overview 1 RT 1: 174-3595 bp Neighborhood of RT #1 [174, 3615] InsG RVT-GII GIIM PHA02517 GrsT Feature: gene Location: 174-1286 bp Ori: KEJ57837.1 Feature: domain Description: InsG Location: 177-1215 bp Feature: domain Description: InsG Location: 177-12 15 bp Feature: gene Location: 1892-2725 bp Ori: KEJ57838.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898-2207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1898-2 2 07 bp Feature: domain Description: GIIM Note: maturase Location: 2282-2501 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 82 -2 501 bp Feature: gene Location: 2917-3288 bp Ori: KEJ57839.1 Feature: domain Description: PHA02517 Location: 2920-3286 bp Feature: domain Description: PHA02 517 Location: 2 92 0-32 86 bp Feature: gene Location: 3334-3615 bp Ori: KEJ57840.1 Feature: domain Description: GrsT Location: 3337-3595 bp Feature: domain Description: GrsT Location: 3337-3595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), GrsT (COG3208)

Seq: JONC01000072.1 (114454 bp)
Overview 1 RT 1: 41857-50009 bp Neighborhood of RT #1 [41857, 50009] PRK11468 PRK11388 RVT-Retrons Feature: gene Location: 41857-42927 bp Ori: KEJ60419.1 Gene: dhaK Feature: domain Description: PRK11468 Location: 41860-42925 bp Feature: domain Description: PRK11468 Location: 41860-42925 bp Feature: gene Location: 43275-45074 bp Ori: KEJ60420.1 Feature: domain Description: PRK11388 Location: 43278-45066 bp Feature: domain Description: PRK113 88 Location: 43 278-45066 bp Feature: gene Location: 46366-48123 bp Ori: KEJ60421.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46510-47128 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46510-47128 bp Feature: gene Location: 48370-49497 bp Feature: gene Location: 49836-50009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11468 (dihydroxyacetone kinase subunit DhaK; Provisional), PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons

Seq: JONC01000060.1 (52506 bp)
Overview 1 RT 1: 13739-19058 bp Neighborhood of RT #1 [13739, 19084] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 13739-15001 bp Ori: KEJ62566.1 Feature: domain Description: YesM Location: 14252-14993 bp Feature: domain Description: YesM Location: 14 252-14 993 bp Feature: gene Location: 15108-15227 bp Feature: gene Location: 15551-16033 bp Ori: KEJ62568.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15560-15800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15560-15800 bp Feature: domain Description: GIIM Note: maturase Location: 15848-16028 bp Feature: domain Description: GIIM Note: maturase Location: 1584 8-16028 bp Feature: gene Location: 16100-16639 bp Ori: KEJ62569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16430-16508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 30-16508 bp Feature: gene Location: 17125-18030 bp Feature: gene Location: 18167-19084 bp Ori: KEJ62571.1 Feature: domain Description: PFLE_PFLC Location: 18203-19058 bp Feature: domain Description: PFLE_PFLC Location: 18203-19058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)