myRT

myRT report for GCA_000712055.1_ASM71205v1

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Seq: JOOA01000001.1 Ruminococcus sp. HUN007 CC97DRAFT_scf7180000000018_quiver.1_C, whole genome shotgun sequence (930338 bp)
Overview 1 RT 1: 194848-197742 bp 2 RT 2: 697844-702280 bp Neighborhood of RT #1 [194848, 197756] COG4824 CHAP PG_binding_1 RVT-DGRs Avd_like Neighborhood of RT #2 [697844, 702280] CcmA RVT-GII GIIM YhcF Feature: gene Location: 194848-195267 bp Feature: domain Description: COG4824 Location: 194869-195250 bp Feature: domain Description: COG4824 Location: 1 94869-1 95250 bp Feature: gene Location: 195278-195970 bp Feature: domain Description: CHAP Location: 195356-195599 bp Feature: domain Description: CHAP Location: 1 95356-1 95599 bp Feature: domain Description: PG_binding_1 Location: 195788-195953 bp Feature: domain Description: PG_binding_1 Location: 1 95788-1 95953 bp Feature: gene Location: 195939-197072 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 196149-196884 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 961 49-1 96884 bp Feature: gene Location: 197133-197360 bp Feature: gene Location: 197406-197756 bp Feature: domain Description: Avd_like Location: 197430-197742 bp Feature: domain Description: Avd_like Location: 1 97430-1 97742 bp Feature: gene Location: 697844-698734 bp Feature: domain Description: CcmA Location: 697847-698600 bp Feature: domain Description: CcmA Location: 697847-698600 bp Feature: gene Location: 698967-699110 bp Feature: gene Location: 699491-700774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699740-700403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699740-700403 bp Feature: domain Description: GIIM Note: maturase Location: 700472-700682 bp Feature: domain Description: GIIM Note: maturase Location: 700472-700682 bp Feature: gene Location: 701289-701660 bp Feature: domain Description: YhcF Location: 701292-701643 bp Feature: domain Description: YhcF Location: 701 292-701 643 bp Feature: gene Location: 701942-702280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4824 (Phage-related holin (Lysis protein) ), CHAP (pfam05257), PG_binding_1 (pfam01471), RVT-DGRs, Avd_like (cd16376), CcmA (COG4133), RVT-GII, GIIM (pfam08388), YhcF (COG1725)

Seq: JOOA01000002.1 Ruminococcus sp. HUN007 CC97DRAFT_scf7180000000020_quiver.2_C, whole genome shotgun sequence (3253928 bp)
Overview 1 RT 1: 744762-754399 bp 2 RT 2: 1900248-1905201 bp 3 RT 3: 3163376-3178478 bp Neighborhood of RT #1 [744762, 754399] Glyco_hydro_11 Fes Dockerin_I RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like IS5 INT_RitB_C_like RVT-GII Neighborhood of RT #2 [1900248, 1905254] Trypsin RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Neighborhood of RT #3 [3163376, 3178483] Big_3_4 Big_3_3 Big_3_3 RVT-GII Phage_int_SAM_1 INT_RitA_C_like IS5 INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM AAA-ATPase_like PDDEXK_9 UPF0175 Feature: gene Location: 744762-744896 bp Feature: gene Location: 745142-747286 bp Feature: domain Description: Glyco_hydro_11 Location: 745322-745889 bp Feature: domain Description: Glyco_hydro_11 Location: 74532 2 -745889 bp Feature: domain Description: Fes Location: 746225-746939 bp Feature: domain Description: Fes Location: 7462 2 5-746939 bp Feature: domain Description: Dockerin_I Location: 747119-747281 bp Feature: domain Description: Dockerin_I Location: 747119-7472 81 bp Feature: gene Location: 747470-748132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747473-747680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747473-747680 bp Feature: domain Description: GIIM Note: maturase Location: 747740-747956 bp Feature: domain Description: GIIM Note: maturase Location: 747740-747956 bp Feature: gene Location: 748304-749539 bp Feature: domain Description: Phage_int_SAM_1 Location: 748673-748886 bp Feature: domain Description: Phage_int_SAM_1 Location: 748673-748886 bp Feature: domain Description: INT_RitA_C_like Location: 748973-749504 bp Feature: domain Description: INT_RitA_C_like Location: 748973-749504 bp Feature: gene Location: 749999-750811 bp Feature: domain Description: IS5 Location: 750188-750710 bp Feature: domain Description: IS5 Location: 750188-750710 bp Feature: gene Location: 750929-751726 bp Feature: domain Description: INT_RitB_C_like Location: 751097-751673 bp Feature: domain Description: INT_RitB_C_like Location: 751097-751673 bp Feature: gene Location: 752087-752272 bp Feature: gene Location: 752722-753531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753022-753406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75302 2 -753406 bp Feature: gene Location: 753573-753842 bp Feature: gene Location: 754130-754399 bp Feature: gene Location: 1900248-1901189 bp Feature: domain Description: Trypsin Location: 1900524-1901043 bp Feature: domain Description: Trypsin Location: 190052 4-1901043 bp Feature: gene Location: 1901743-1901886 bp Feature: gene Location: 1902263-1902892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1902266-1902521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1902 2 66-1902 52 1 bp Feature: domain Description: GIIM Note: maturase Location: 1902590-1902809 bp Feature: domain Description: GIIM Note: maturase Location: 1902 590-1902 809 bp Feature: gene Location: 1903061-1904296 bp Feature: domain Description: Phage_int_SAM_1 Location: 1903430-1903643 bp Feature: domain Description: Phage_int_SAM_1 Location: 1903430-1903643 bp Feature: domain Description: INT_RitA_C_like Location: 1903730-1904261 bp Feature: domain Description: INT_RitA_C_like Location: 1903730-19042 61 bp Feature: gene Location: 1904289-1905254 bp Feature: domain Description: INT_RitB_C_like Location: 1904625-1905201 bp Feature: domain Description: INT_RitB_C_like Location: 190462 5-19052 01 bp Feature: gene Location: 3163376-3169642 bp Feature: domain Description: Big_3_4 Location: 3167102-3167174 bp Feature: domain Description: Big_3_4 Location: 3167102 -3167174 bp Feature: domain Description: Big_3_3 Location: 3168176-3168389 bp Feature: domain Description: Big_3_3 Location: 3168176-3168389 bp Feature: domain Description: Big_3_3 Location: 3168482-3168869 bp Feature: domain Description: Big_3_3 Location: 3168482 -3168869 bp Feature: gene Location: 3169930-3170094 bp Feature: gene Location: 3170108-3170905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3170459-3170843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3170459-3170843 bp Feature: gene Location: 3171004-3172239 bp Feature: domain Description: Phage_int_SAM_1 Location: 3171373-3171586 bp Feature: domain Description: Phage_int_SAM_1 Location: 3171373-3171586 bp Feature: domain Description: INT_RitA_C_like Location: 3171673-3172204 bp Feature: domain Description: INT_RitA_C_like Location: 3171673-3172 2 04 bp Feature: gene Location: 3172515-3173510 bp Feature: domain Description: IS5 Location: 3172704-3173472 bp Feature: domain Description: IS5 Location: 3172 704-3173472 bp Feature: gene Location: 3173935-3174426 bp Feature: domain Description: INT_RitB_C_like Location: 3173941-3174373 bp Feature: domain Description: INT_RitB_C_like Location: 3173941-3174373 bp Feature: gene Location: 3174423-3175433 bp Feature: domain Description: Phage_int_SAM_1 Location: 3174465-3174720 bp Feature: domain Description: Phage_int_SAM_1 Location: 3174465-317472 0 bp Feature: domain Description: INT_RitC_C_like Location: 3174801-3175353 bp Feature: domain Description: INT_RitC_C_like Location: 3174801-3175353 bp Feature: gene Location: 3175561-3176214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3175564-3175771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3175564-3175771 bp Feature: domain Description: GIIM Note: maturase Location: 3175825-3176059 bp Feature: domain Description: GIIM Note: maturase Location: 317582 5-3176059 bp Feature: gene Location: 3176382-3178058 bp Feature: domain Description: AAA-ATPase_like Location: 3176421-3177186 bp Feature: domain Description: AAA-ATPase_like Location: 317642 1-3177186 bp Feature: domain Description: PDDEXK_9 Location: 3177747-3178002 bp Feature: domain Description: PDDEXK_9 Location: 3177747-3178002 bp Feature: gene Location: 3178229-3178483 bp Feature: domain Description: UPF0175 Location: 3178256-3178478 bp Feature: domain Description: UPF0175 Location: 31782 56-3178478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_11 (pfam00457), Fes (COG2382), Dockerin_I (cd14256), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), IS5 (COG3039), INT_RitB_C_like (cd00797), Trypsin (pfam00089)
Big_3_4 (pfam13754), Big_3_3 (pfam13750), INT_RitC_C_like (cd01182), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), UPF0175 (pfam03683)