myRT

myRT report for GCA_000712315.1_SOAPdenovo_v1.05

Download annotations/find similar RTs

Seq: JAMD01000004.1 Sulfitobacter pseudonitzschiae strain H3 contig4, whole genome shotgun sequence (479674 bp)
Overview 1 RT 1: 192546-199431 bp Neighborhood of RT #1 [192546, 200114] lysA DUF4175 RVT-Retrons zinc_ribbon_4 Feature: gene Location: 192546-193811 bp Ori: KEJ96051.1 Feature: domain Description: lysA Location: 192567-193791 bp Feature: domain Description: lysA Location: 1 92567-1 93791 bp Feature: gene Location: 193864-196452 bp Ori: KEJ96052.1 Feature: domain Description: DUF4175 Location: 193954-196444 bp Feature: domain Description: DUF41 75 Location: 1 93954-1 96444 bp Feature: gene Location: 196783-197715 bp Ori: KEJ96053.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 196924-197452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 96924-1 97452 bp Feature: gene Location: 197892-198629 bp Feature: gene Location: 199323-200114 bp Ori: KEJ96055.1 Feature: domain Description: zinc_ribbon_4 Location: 199326-199431 bp Feature: domain Description: zinc_ribbon_4 Location: 1 99326-1 99431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lysA (TIGR01048), DUF4175 (pfam13779), RVT-Retrons, zinc_ribbon_4 (pfam13717)

Seq: JAMD01000028.1 Sulfitobacter pseudonitzschiae strain H3 contig28, whole genome shotgun sequence (23823 bp)
Overview 1 RT 1: 1-4636 bp Neighborhood of RT #1 [1, 6372] RVT-Retrons T5orf172 ResIII Feature: gene Location: 1-302 bp Feature: gene Location: 1452-2228 bp Ori: KEJ93755.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1494-2016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1494-2 016 bp Feature: gene Location: 3264-3737 bp Feature: gene Location: 3832-6372 bp Ori: KEJ93757.1 Feature: domain Description: T5orf172 Location: 3919-4156 bp Feature: domain Description: T5orf172 Location: 3919-4156 bp Feature: domain Description: ResIII Location: 4207-4636 bp Feature: domain Description: ResIII Location: 42 07-4636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, T5orf172 (smart00974), ResIII (pfam04851)