myRT

myRT report for GCA_000712555.1_LTH2584

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Seq: JOSX01000019.1 Lactobacillus reuteri strain LTH2584 scaffold2.1, whole genome shotgun sequence (245555 bp)
Overview 1 RT 1: 144801-151388 bp Neighborhood of RT #1 [144801, 151390] Acetyltransf_1 thia_cytX RVT-GII GIIM asnC PRK05425 Feature: gene Location: 144801-145322 bp Ori: KEK14975.1 Feature: domain Description: Acetyltransf_1 Location: 144897-145161 bp Feature: domain Description: Acetyltransf_1 Location: 1 44897-1 451 61 bp Feature: gene Location: 145396-146565 bp Ori: KEK14976.1 Feature: domain Description: thia_cytX Location: 145426-146503 bp Feature: domain Description: thia_cytX Location: 1 45426-1 46503 bp Feature: gene Location: 147096-148478 bp Ori: KEK14977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147414-148032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4741 4-1 48032 bp Feature: domain Description: GIIM Note: maturase Location: 148086-148314 bp Feature: domain Description: GIIM Note: maturase Location: 1 48086-1 4831 4 bp Feature: gene Location: 149062-150360 bp Ori: KEK14978.1 Gene: asnC Feature: domain Description: asnC Location: 149077-150355 bp Feature: domain Description: asnC Location: 1 49077-1 50355 bp Feature: gene Location: 150380-151390 bp Ori: KEK14979.1 Feature: domain Description: PRK05425 Location: 150407-151388 bp Feature: domain Description: PRK05425 Location: 1 50407-1 51 388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), thia_cytX (TIGR02358), RVT-GII, GIIM (pfam08388), asnC (PRK03932), PRK05425 (asparagine synthetase AsnA; Provisional)

Seq: JOSX01000020.1 Lactobacillus reuteri strain LTH2584 scaffold1.1, whole genome shotgun sequence (628010 bp)
Overview 1 RT 1: 233464-239792 bp Neighborhood of RT #1 [233464, 239803] PRK11749 Ape1-like_AP-endo RVT-GII GIIM DacC Feature: gene Location: 233464-234705 bp Ori: KEK14479.1 Feature: domain Description: PRK11749 Location: 233476-234697 bp Feature: domain Description: PRK11749 Location: 2 33476-2 34697 bp Feature: gene Location: 235001-235762 bp Ori: KEK14480.1 Feature: domain Description: Ape1-like_AP-endo Location: 235004-235742 bp Feature: domain Description: Ape1-like_AP-endo Location: 2 35004-2 35742 bp Feature: gene Location: 235887-237269 bp Ori: KEK14481.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236205-236823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 362 05-2 3682 3 bp Feature: domain Description: GIIM Note: maturase Location: 236877-237105 bp Feature: domain Description: GIIM Note: maturase Location: 2 36877-2 37105 bp Feature: gene Location: 237769-238209 bp Feature: gene Location: 238565-239803 bp Ori: KEK14483.1 Feature: domain Description: DacC Location: 238601-239792 bp Feature: domain Description: DacC Location: 2 38601-2 39792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11749 (dihydropyrimidine dehydrogenase subunit A; Provisional), Ape1-like_AP-endo (cd09087), RVT-GII, GIIM (pfam08388), DacC (COG1686)

Seq: JOSX01000013.1 Lactobacillus reuteri strain LTH2584 scaffold4.1, whole genome shotgun sequence (370056 bp)
Overview 1 RT 1: 39306-46369 bp 2 RT 2: 324244-329373 bp Neighborhood of RT #1 [39306, 46369] RVT-GII GIIM Crp Neighborhood of RT #2 [324244, 329402] zinc_ribbon_2 DEXQc_UvrD UvrD_C uvrD RVT-GII GIIM OsmC Feature: gene Location: 39306-40265 bp Feature: gene Location: 40275-40712 bp Feature: gene Location: 41398-42780 bp Ori: KEK15428.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41716-42334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41716-423 3 4 bp Feature: domain Description: GIIM Note: maturase Location: 42388-42616 bp Feature: domain Description: GIIM Note: maturase Location: 423 88-42616 bp Feature: gene Location: 43635-44300 bp Ori: KEK15429.1 Feature: domain Description: Crp Location: 43707-44271 bp Feature: domain Description: Crp Location: 43 707-44271 bp Feature: gene Location: 44471-46369 bp Feature: gene Location: 324244-325026 bp Ori: KEK15694.1 Feature: domain Description: zinc_ribbon_2 Location: 324253-324319 bp Feature: domain Description: zinc_ribbon_2 Location: 3 24253 -3 243 19 bp Feature: gene Location: 325175-326581 bp Ori: KEK15695.1 Feature: domain Description: DEXQc_UvrD Location: 325232-325967 bp Feature: domain Description: DEXQc_UvrD Location: 3 2523 2-3 25967 bp Feature: domain Description: UvrD_C Location: 326027-326327 bp Feature: domain Description: UvrD_C Location: 3 26027-3 263 27 bp Feature: domain Description: uvrD Location: 326381-326576 bp Feature: domain Description: uvrD Location: 3 263 81-3 26576 bp Feature: gene Location: 327120-328502 bp Ori: KEK15696.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327438-328056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2743 8-3 28056 bp Feature: domain Description: GIIM Note: maturase Location: 328110-328338 bp Feature: domain Description: GIIM Note: maturase Location: 3 28110-3 283 3 8 bp Feature: gene Location: 328629-328814 bp Feature: gene Location: 328974-329402 bp Ori: KEK15698.1 Feature: domain Description: OsmC Location: 329076-329373 bp Feature: domain Description: OsmC Location: 3 29076-3 293 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Crp (pfam00325), zinc_ribbon_2 (pfam13240), DEXQc_UvrD (cd17932), UvrD_C (pfam13361), uvrD (TIGR01075), OsmC (pfam02566)

Seq: JOSX01000017.1 Lactobacillus reuteri strain LTH2584 scaffold25.1, whole genome shotgun sequence (209 bp)
Overview 1 RT 1: 1-157 bp Neighborhood of RT #1 [1, 160] RVT-GII Feature: gene Location: 1-160 bp Ori: KEK15135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JOSX01000007.1 Lactobacillus reuteri strain LTH2584 scaffold3.1, whole genome shotgun sequence (158588 bp)
Overview 1 RT 1: 5802-11255 bp Neighborhood of RT #1 [5802, 11254] PRK09263 MFS_LmrB_MDR_like RVT-GII RVT-GII Feature: gene Location: 5802-8036 bp Ori: KEK16349.1 Feature: domain Description: PRK09263 Location: 5853-7953 bp Feature: domain Description: PRK09263 Location: 5 85 3-795 3 bp Feature: gene Location: 8442-9848 bp Ori: KEK16350.1 Feature: domain Description: MFS_LmrB_MDR_like Location: 8505-9825 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 85 05 -9825 bp Feature: gene Location: 10651-10881 bp Ori: KEK16351.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10657-10882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065 7-10882 bp Feature: gene Location: 10979-11254 bp Ori: KEK16352.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11087-11255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11087-1125 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09263 (anaerobic ribonucleoside triphosphate reductase; Provisional), MFS_LmrB_MDR_like (cd17503), RVT-GII