myRT

myRT report for GCA_000712565.2_ASM71256v2

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Seq: JOSW02000008.1 Lactobacillus reuteri strain TMW1.656 contig08, whole genome shotgun sequence (210714 bp)
Overview 1 RT 1: 187221-192580 bp Neighborhood of RT #1 [187221, 192621] PolY_Pol_V_umuC RVT-GII GIIM ACD_LpsHSP_like ARA1 Feature: gene Location: 187221-187664 bp Feature: gene Location: 187664-189166 bp Ori: KEK15076.1 Feature: domain Description: PolY_Pol_V_umuC Location: 187685-188924 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1 87685-1 88924 bp Feature: gene Location: 189324-190706 bp Ori: KEK15075.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189642-190260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 89642-1 90260 bp Feature: domain Description: GIIM Note: maturase Location: 190314-190542 bp Feature: domain Description: GIIM Note: maturase Location: 1 9031 4-1 90542 bp Feature: gene Location: 191209-191640 bp Ori: KEK15074.1 Feature: domain Description: ACD_LpsHSP_like Location: 191320-191596 bp Feature: domain Description: ACD_LpsHSP_like Location: 1 91 320-1 91 596 bp Feature: gene Location: 191773-192621 bp Ori: KEK15073.1 Feature: domain Description: ARA1 Location: 191785-192580 bp Feature: domain Description: ARA1 Location: 1 91 785-1 92580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII, GIIM (pfam08388), ACD_LpsHSP_like (cd06471), ARA1 (COG0656)

Seq: JOSW02000004.1 Lactobacillus reuteri strain TMW1.656 contig04, whole genome shotgun sequence (331633 bp)
Overview 1 RT 1: 215008-221943 bp Neighborhood of RT #1 [215008, 221954] Era reco RVT-GII GIIM GlyQ glyS Feature: gene Location: 215008-215913 bp Ori: KEK15878.1 Gene: era Feature: domain Description: Era Location: 215023-215902 bp Feature: domain Description: Era Location: 2 1502 3-2 15902 bp Feature: gene Location: 215929-216714 bp Ori: KEK15879.1 Feature: domain Description: reco Location: 215950-216670 bp Feature: domain Description: reco Location: 2 15950-2 16670 bp Feature: gene Location: 217406-218788 bp Ori: KOF04773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217724-218342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1772 4-2 18342 bp Feature: domain Description: GIIM Note: maturase Location: 218396-218624 bp Feature: domain Description: GIIM Note: maturase Location: 2 18396-2 1862 4 bp Feature: gene Location: 218891-219877 bp Ori: KEK15935.2 Gene: glyQ Feature: domain Description: GlyQ Location: 218897-219770 bp Feature: domain Description: GlyQ Location: 2 18897-2 19770 bp Feature: gene Location: 219879-221954 bp Ori: KEK15936.1 Feature: domain Description: glyS Location: 219888-221943 bp Feature: domain Description: glyS Location: 2 19888-2 2 1943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Era (COG1159), reco (TIGR00613), RVT-GII, GIIM (pfam08388), GlyQ (COG0752), glyS (TIGR00211)

Seq: JOSW02000006.1 Lactobacillus reuteri strain TMW1.656 contig06, whole genome shotgun sequence (73857 bp)
Overview 1 RT 1: 55335-61184 bp Neighborhood of RT #1 [55335, 61195] BY-kinase polys_exp_MPA1 RVT-UG2 PRA1 RmlD_sub_bind Feature: gene Location: 55335-56084 bp Ori: KEK16945.1 Feature: domain Description: BY-kinase Location: 55437-56013 bp Feature: domain Description: BY-kinase Location: 5543 7-56013 bp Feature: gene Location: 56097-56870 bp Ori: KEK16944.1 Feature: domain Description: polys_exp_MPA1 Location: 56127-56802 bp Feature: domain Description: polys_exp_MPA1 Location: 56127-56802 bp Feature: gene Location: 57562-59061 bp Ori: KEK16943.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 57766-58606 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 57766-58606 bp Feature: gene Location: 59507-60274 bp Ori: KEK16942.1 Feature: domain Description: PRA1 Location: 59546-59846 bp Feature: domain Description: PRA1 Location: 59546-59846 bp Feature: gene Location: 60350-61195 bp Ori: KEK16941.1 Feature: domain Description: RmlD_sub_bind Location: 60359-61184 bp Feature: domain Description: RmlD_sub_bind Location: 603 59-61184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BY-kinase (cd05387), polys_exp_MPA1 (TIGR01006), RVT-UG2, PRA1 (pfam03208), RmlD_sub_bind (pfam04321)

Seq: JOSW02000015.1 Lactobacillus reuteri strain TMW1.656 contig15, whole genome shotgun sequence (298707 bp)
Overview 1 RT 1: 166064-172094 bp Neighborhood of RT #1 [166064, 172096] PRK05368 cysK RVT-GII GIIM HTH_TipAL-Mta FA_desaturase bac_cardiolipin Feature: gene Location: 166064-166891 bp Ori: KEK14039.1 Feature: domain Description: PRK05368 Location: 166076-166862 bp Feature: domain Description: PRK05368 Location: 166076-166862 bp Feature: gene Location: 166897-167820 bp Ori: KEK14040.1 Feature: domain Description: cysK Location: 166924-167812 bp Feature: domain Description: cysK Location: 166924 -167812 bp Feature: gene Location: 167907-169289 bp Ori: KEK14041.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168225-168843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168225-16884 3 bp Feature: domain Description: GIIM Note: maturase Location: 168897-169125 bp Feature: domain Description: GIIM Note: maturase Location: 168897-169125 bp Feature: gene Location: 169845-170549 bp Ori: KEK14042.1 Feature: domain Description: HTH_TipAL-Mta Location: 169851-170151 bp Feature: domain Description: HTH_TipAL-Mta Location: 169851-170151 bp Feature: domain Description: FA_desaturase Location: 170226-170508 bp Feature: domain Description: FA_desaturase Location: 170226-170508 bp Feature: gene Location: 170603-172096 bp Ori: KEK14043.1 Feature: domain Description: bac_cardiolipin Location: 170633-172094 bp Feature: domain Description: bac_cardiolipin Location: 170633-172094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05368 (homoserine O-succinyltransferase; Provisional), cysK (TIGR01139), RVT-GII, GIIM (pfam08388), HTH_TipAL-Mta (cd01106), FA_desaturase (pfam00487), bac_cardiolipin (TIGR04265)