myRT

myRT report for GCA_000713015.1_ASM71301v1

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Seq: JORE01000102.1 (7840 bp)
Overview 1 RT 1: 2362-6554 bp Neighborhood of RT #1 [2362, 6554] DUF905 PRK13732 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2362-2595 bp Ori: KEM20709.1 Feature: domain Description: DUF905 Location: 2392-2590 bp Feature: domain Description: DUF905 Location: 2392-2590 bp Feature: gene Location: 2652-3179 bp Ori: KEM20710.1 Feature: domain Description: PRK13732 Location: 2655-3177 bp Feature: domain Description: PRK1 3732 Location: 2655-31 77 bp Feature: gene Location: 4383-6050 bp Ori: KEM20711.1 Feature: domain Description: RVT_N Location: 4431-4668 bp Feature: domain Description: RVT_N Location: 4431 -4668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4719-5361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 9-5361 bp Feature: domain Description: GIIM Note: maturase Location: 5412-5646 bp Feature: domain Description: GIIM Note: maturase Location: 541 2-5646 bp Feature: domain Description: HNHc Note: nucleases Location: 5856-6015 bp Feature: domain Description: HNHc Note: nucleases Location: 5856-601 5 bp Feature: gene Location: 6194-6349 bp Feature: gene Location: 6363-6554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JORE01000145.1 (2668 bp)
Overview 1 RT 1: 1-2307 bp Neighborhood of RT #1 [1, 2307] PHA02517 RVT-GII GIIM Feature: gene Location: 1-297 bp Ori: KEM18058.1 Feature: domain Description: PHA02517 Location: 4-298 bp Feature: domain Description: PHA02 517 Location: 4-2 98 bp Feature: gene Location: 489-1997 bp Ori: KEM18059.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-1479 bp Feature: domain Description: GIIM Note: maturase Location: 1554-1752 bp Feature: domain Description: GIIM Note: maturase Location: 1554-1752 bp Feature: gene Location: 2194-2307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JORE01000112.1 (9162 bp)
Overview 1 RT 1: 92-2621 bp Neighborhood of RT #1 [92, 2686] RVT-GII GIIM PHA02517 Feature: gene Location: 92-1600 bp Ori: KEM20029.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 50-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1157-13 55 bp Feature: gene Location: 1797-1910 bp Feature: gene Location: 2207-2686 bp Ori: KEM20031.1 Feature: domain Description: PHA02517 Location: 2267-2621 bp Feature: domain Description: PHA02517 Location: 2267-2621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JORE01000039.1 (14562 bp)
Overview 1 RT 1: 9974-14201 bp Neighborhood of RT #1 [9974, 14201] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM Feature: gene Location: 9974-11824 bp Ori: KEM29646.1 Feature: domain Description: LysM Location: 10187-10325 bp Feature: domain Description: LysM Location: 10187-10325 bp Feature: domain Description: IAT_beta Location: 10406-11231 bp Feature: domain Description: IAT_beta Location: 104 06-11231 bp Feature: domain Description: PRK15318 Location: 11432-11555 bp Feature: domain Description: PRK15318 Location: 114 32-11555 bp Feature: domain Description: Invasin_D3 Location: 11570-11807 bp Feature: domain Description: Invasin_D3 Location: 11570-11807 bp Feature: gene Location: 11826-12218 bp Ori: KEM29647.1 Feature: domain Description: PHA02517 Location: 11832-12210 bp Feature: domain Description: PHA02517 Location: 11832-12210 bp Feature: gene Location: 12383-13891 bp Ori: KEM29648.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12641-13373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264 1-13373 bp Feature: domain Description: GIIM Note: maturase Location: 13448-13646 bp Feature: domain Description: GIIM Note: maturase Location: 134 4 8-1364 6 bp Feature: gene Location: 14088-14201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JORE01000195.1 (4199 bp)
Overview 1 RT 1: 1177-4200 bp Neighborhood of RT #1 [1177, 4199] RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 1177-1350 bp Feature: gene Location: 1325-1450 bp Feature: gene Location: 1710-3368 bp Ori: KEM15791.1 Feature: domain Description: RVT_N Location: 1722-1965 bp Feature: domain Description: RVT_N Location: 1722-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2010-2646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2010-2646 bp Feature: domain Description: GIIM Note: maturase Location: 2697-2931 bp Feature: domain Description: GIIM Note: maturase Location: 2697-2931 bp Feature: domain Description: HNHc Note: nucleases Location: 3162-3312 bp Feature: domain Description: HNHc Note: nucleases Location: 3162-3312 bp Feature: gene Location: 4011-4199 bp Ori: KEM15792.1 Feature: domain Description: PRK13699 Location: 4035-4200 bp Feature: domain Description: PRK13699 Location: 4035 -4200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: JORE01000040.1 (18437 bp)
Overview 1 RT 1: 92-2561 bp Neighborhood of RT #1 [92, 2626] RVT-GII GIIM PHA02517 Feature: gene Location: 92-1600 bp Ori: KEM29610.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: gene Location: 1797-1910 bp Feature: gene Location: 2207-2626 bp Ori: KEM29612.1 Feature: domain Description: PHA02517 Location: 2222-2561 bp Feature: domain Description: PHA02517 Location: 2222-256 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JORE01000106.1 (1531 bp)
Overview 1 RT 1: 113-1420 bp Neighborhood of RT #1 [113, 1494] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 113-373 bp Ori: KEM20477.1 Feature: domain Description: Ogr_Delta Location: 122-263 bp Feature: domain Description: Ogr_Delta Location: 122-263 bp Feature: gene Location: 416-787 bp Ori: KEM20478.1 Feature: domain Description: D Location: 446-761 bp Feature: domain Description: D Location: 446-7 61 bp Feature: gene Location: 925-1494 bp Ori: KEM20479.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1135 bp Feature: domain Description: GIIM Note: maturase Location: 1252-1420 bp Feature: domain Description: GIIM Note: maturase Location: 1252-1420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388)

Seq: JORE01000161.1 (5929 bp)
Overview 1 RT 1: 1-3536 bp Neighborhood of RT #1 [1, 3536] RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 1-121 bp Feature: gene Location: 381-2039 bp Ori: KEM17436.1 Feature: domain Description: RVT_N Location: 393-636 bp Feature: domain Description: RVT_N Location: 393-636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681-1317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68 1-1317 bp Feature: domain Description: GIIM Note: maturase Location: 1368-1602 bp Feature: domain Description: GIIM Note: maturase Location: 1368 -1602 bp Feature: domain Description: HNHc Note: nucleases Location: 1833-1983 bp Feature: domain Description: HNHc Note: nucleases Location: 18 33-198 3 bp Feature: gene Location: 2832-3314 bp Ori: KEM17437.1 Feature: domain Description: PRK13699 Location: 2835-3312 bp Feature: domain Description: PRK13699 Location: 28 35-3312 bp Feature: gene Location: 3315-3536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)