myRT

myRT report for GCA_000713025.1_ASM71302v1

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Seq: JORD01000006.1 (14595 bp)
Overview 1 RT 1: 7439-14596 bp Neighborhood of RT #1 [7439, 14595] Plasmid_stab_B RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 7439-7861 bp Feature: domain Description: Plasmid_stab_B Location: 7454-7667 bp Feature: domain Description: Plasmid_stab_B Location: 7454-7667 bp Feature: gene Location: 8019-8144 bp Feature: gene Location: 8893-10617 bp Feature: RT Description: RVT_N Location: 8950-9187 bp Feature: RT Description: RVT_N Location: 8950-91 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9238-9886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9238-9886 bp Feature: domain Description: YkfC Location: 10018-10174 bp Feature: domain Description: YkfC Location: 1 001 8-1 01 74 bp Feature: domain Description: HNHc Note: nucleases Location: 10402-10561 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0402-1 0561 bp Feature: gene Location: 10694-11596 bp Feature: domain Description: DUF1281 Location: 10763-11291 bp Feature: domain Description: DUF1 281 Location: 1 0763-1 1 291 bp Feature: domain Description: DUF1281_C Location: 11297-11537 bp Feature: domain Description: DUF1 281 _C Location: 1 1 297-1 1 537 bp Feature: gene Location: 11600-11773 bp Feature: gene Location: 11748-11873 bp Feature: gene Location: 12133-13791 bp Feature: RT Description: RVT_N Location: 12145-12388 bp Feature: RT Description: RVT_N Location: 1 21 45-1 2388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12433-13069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2433-1 3069 bp Feature: domain Description: GIIM Note: maturase Location: 13120-13354 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 20-1 3354 bp Feature: domain Description: HNHc Note: nucleases Location: 13585-13735 bp Feature: domain Description: HNHc Note: nucleases Location: 1 3585-1 3735 bp Feature: gene Location: 14434-14595 bp Feature: domain Description: PRK13699 Location: 14458-14596 bp Feature: domain Description: PRK1 3699 Location: 1 4458-1 4596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), Plasmid_stab_B (pfam10784), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), GIIM (pfam08388), PRK13699 (putative methylase; Provisional)

Seq: JORD01000028.1 (3705 bp)
Overview 1 RT 1: 515-3554 bp Neighborhood of RT #1 [515, 3628] HTH_7 PRK15442 RVT-GII GIIM Feature: gene Location: 515-637 bp Feature: domain Description: HTH_7 Location: 527-623 bp Feature: domain Description: HTH_7 Location: 52 7-62 3 bp Feature: gene Location: 820-1680 bp Feature: domain Description: PRK15442 Location: 829-1678 bp Feature: domain Description: PRK15442 Location: 82 9-1678 bp Feature: gene Location: 2297-3628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582-3269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 582 -32 69 bp Feature: domain Description: GIIM Note: maturase Location: 3386-3554 bp Feature: domain Description: GIIM Note: maturase Location: 3386-3554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_7 (pfam02796), PRK15442 (beta-lactamase TEM; Provisional)

Seq: JORD01000141.1 (84811 bp)
Overview 1 RT 1: 64105-68869 bp Neighborhood of RT #1 [64105, 68934] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 64105-65835 bp Feature: domain Description: LysM Location: 64198-64336 bp Feature: domain Description: LysM Location: 64198-643 3 6 bp Feature: domain Description: IAT_beta Location: 64417-65242 bp Feature: domain Description: IAT_beta Location: 64417-65242 bp Feature: domain Description: PRK15318 Location: 65443-65566 bp Feature: domain Description: PRK153 18 Location: 65443 -65566 bp Feature: domain Description: Invasin_D3 Location: 65581-65818 bp Feature: domain Description: Invasin_D3 Location: 65581-65818 bp Feature: gene Location: 65837-66229 bp Feature: domain Description: PHA02517 Location: 65843-66221 bp Feature: domain Description: PHA02517 Location: 65843 -66221 bp Feature: gene Location: 66394-67902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66652-67384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66652-673 84 bp Feature: domain Description: GIIM Note: maturase Location: 67459-67657 bp Feature: domain Description: GIIM Note: maturase Location: 67459-67657 bp Feature: gene Location: 68099-68212 bp Feature: gene Location: 68509-68934 bp Feature: domain Description: PHA02517 Location: 68530-68869 bp Feature: domain Description: PHA02517 Location: 6853 0-68869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JORD01000064.1 (2558 bp)
Overview 1 RT 1: 348-2557 bp Neighborhood of RT #1 [348, 2558] RVT-GII Rve Feature: gene Location: 348-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1086 bp Feature: gene Location: 1878-2018 bp Feature: gene Location: 2239-2558 bp Feature: domain Description: Rve Location: 2242-2557 bp Feature: domain Description: Rve Location: 224 2-2557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII

Seq: JORD01000015.1 (8814 bp)
Overview 1 RT 1: 1-3533 bp Neighborhood of RT #1 [1, 3533] RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 1-118 bp Feature: gene Location: 378-2036 bp Feature: RT Description: RVT_N Location: 390-633 bp Feature: RT Description: RVT_N Location: 390-633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678-1314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678-1314 bp Feature: domain Description: GIIM Note: maturase Location: 1365-1599 bp Feature: domain Description: GIIM Note: maturase Location: 1365 -15 99 bp Feature: domain Description: HNHc Note: nucleases Location: 1830-1980 bp Feature: domain Description: HNHc Note: nucleases Location: 1830-1980 bp Feature: gene Location: 2829-3311 bp Feature: domain Description: PRK13699 Location: 2832-3309 bp Feature: domain Description: PRK13699 Location: 2832-3309 bp Feature: gene Location: 3312-3533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)