myRT

myRT report for GCA_000713335.1_ASM71333v1

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Seq: JORT01000201.1 (2581 bp)
Overview 1 RT 1: 1-2278 bp Neighborhood of RT #1 [1, 2523] PHA02517 RVT-GII GIIM Feature: gene Location: 1-408 bp Feature: domain Description: PHA02517 Location: 4-343 bp Feature: domain Description: PHA0251 7 Location: 4-343 bp Feature: gene Location: 1015-2523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273-2005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 273-2005 bp Feature: domain Description: GIIM Note: maturase Location: 2080-2278 bp Feature: domain Description: GIIM Note: maturase Location: 2080-2278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JORT01000158.1 (2507 bp)
Overview 1 RT 1: 1-1615 bp Neighborhood of RT #1 [1, 1860] PHA02517 RVT-GII GIIM Feature: gene Location: 1-235 bp Feature: domain Description: PHA02517 Location: 4-235 bp Feature: domain Description: PHA02 517 Location: 4-2 35 bp Feature: gene Location: 352-1860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-1342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-1342 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JORT01000211.1 (2600 bp)
Overview 1 RT 1: 38-2107 bp Neighborhood of RT #1 [38, 2181] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 38-298 bp Feature: domain Description: Ogr_Delta Location: 47-188 bp Feature: domain Description: Ogr_Delta Location: 47-188 bp Feature: gene Location: 341-712 bp Feature: domain Description: D Location: 371-686 bp Feature: domain Description: D Location: 3 71-686 bp Feature: gene Location: 850-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135-1822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 5-1822 bp Feature: domain Description: GIIM Note: maturase Location: 1939-2107 bp Feature: domain Description: GIIM Note: maturase Location: 193 9-2107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), Ogr_Delta (pfam04606), RVT-GII, GIIM (pfam08388)

Seq: JORT01000171.1 (6030 bp)
Overview 1 RT 1: 45-3585 bp Neighborhood of RT #1 [45, 3585] RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 45-170 bp Feature: gene Location: 430-2088 bp Feature: RT Description: RVT_N Location: 442-685 bp Feature: RT Description: RVT_N Location: 4 4 2-685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730-1366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730-1366 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1651 bp Feature: domain Description: GIIM Note: maturase Location: 14 17-1651 bp Feature: domain Description: HNHc Note: nucleases Location: 1882-2032 bp Feature: domain Description: HNHc Note: nucleases Location: 1882-2032 bp Feature: gene Location: 2881-3363 bp Feature: domain Description: PRK13699 Location: 2884-3361 bp Feature: domain Description: PRK13699 Location: 2884 -3361 bp Feature: gene Location: 3364-3585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JORT01000040.1 (53278 bp)
Overview 1 RT 1: 48834-52386 bp Neighborhood of RT #1 [48834, 52631] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM Feature: gene Location: 48834-50564 bp Feature: domain Description: LysM Location: 48927-49065 bp Feature: domain Description: LysM Location: 48927-49065 bp Feature: domain Description: IAT_beta Location: 49146-49971 bp Feature: domain Description: IAT_beta Location: 49146-49971 bp Feature: domain Description: PRK15318 Location: 50172-50295 bp Feature: domain Description: PRK15 318 Location: 5 0172-5 0295 bp Feature: domain Description: Invasin_D3 Location: 50310-50547 bp Feature: domain Description: Invasin_D3 Location: 5 0310-5 05 47 bp Feature: gene Location: 50566-50958 bp Feature: domain Description: PHA02517 Location: 50572-50950 bp Feature: domain Description: PHA025 17 Location: 5 05 72-5 095 0 bp Feature: gene Location: 51123-52631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51381-52113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 1381-5 2113 bp Feature: domain Description: GIIM Note: maturase Location: 52188-52386 bp Feature: domain Description: GIIM Note: maturase Location: 5 2188-5 2386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JORT01000117.1 (5869 bp)
Overview 1 RT 1: 76-3106 bp Neighborhood of RT #1 [76, 3106] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 76-300 bp Feature: gene Location: 935-2602 bp Feature: RT Description: RVT_N Location: 983-1220 bp Feature: RT Description: RVT_N Location: 983-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271-1913 bp Feature: domain Description: GIIM Note: maturase Location: 1964-2198 bp Feature: domain Description: GIIM Note: maturase Location: 196 4-2198 bp Feature: domain Description: HNHc Note: nucleases Location: 2408-2567 bp Feature: domain Description: HNHc Note: nucleases Location: 2408-256 7 bp Feature: gene Location: 2746-2901 bp Feature: gene Location: 2915-3106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JORT01000041.1 (17593 bp)
Overview 1 RT 1: 59-2914 bp Neighborhood of RT #1 [59, 2925] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 59-1567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317-1049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317 -1049 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1322 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1322 bp Feature: gene Location: 2174-2593 bp Feature: domain Description: PHA02517 Location: 2189-2528 bp Feature: domain Description: PHA02517 Location: 2189-2528 bp Feature: gene Location: 2641-2925 bp Feature: domain Description: InsE Location: 2653-2914 bp Feature: domain Description: InsE Location: 2653-2914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: JORT01000174.1 (7240 bp)
Overview 1 RT 1: 4315-6450 bp Neighborhood of RT #1 [4315, 6506] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4315-4488 bp Feature: gene Location: 4463-4588 bp Feature: gene Location: 4848-6506 bp Feature: RT Description: RVT_N Location: 4860-5103 bp Feature: RT Description: RVT_N Location: 48 60-5103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5148-5784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5148 -578 4 bp Feature: domain Description: GIIM Note: maturase Location: 5835-6069 bp Feature: domain Description: GIIM Note: maturase Location: 58 35-6069 bp Feature: domain Description: HNHc Note: nucleases Location: 6300-6450 bp Feature: domain Description: HNHc Note: nucleases Location: 6300-6450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JORT01000214.1 (9297 bp)
Overview 1 RT 1: 27-3126 bp Neighborhood of RT #1 [27, 3140] RVT-GII GIIM PRK15442 HTH_7 Feature: gene Location: 27-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-9 9 9 bp Feature: domain Description: GIIM Note: maturase Location: 1116-1284 bp Feature: domain Description: GIIM Note: maturase Location: 1116-1284 bp Feature: gene Location: 1975-2835 bp Feature: domain Description: PRK15442 Location: 1984-2833 bp Feature: domain Description: PRK15442 Location: 19 84-2833 bp Feature: gene Location: 3018-3140 bp Feature: domain Description: HTH_7 Location: 3030-3126 bp Feature: domain Description: HTH_7 Location: 3030-3126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15442 (beta-lactamase TEM; Provisional), RVT-GII, GIIM (pfam08388), HTH_7 (pfam02796)