myRT

myRT report for GCA_000713615.1_ASM71361v1

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Seq: JOSH01000127.1 (2627 bp)
Overview 1 RT 1: 1-2327 bp Neighborhood of RT #1 [1, 2551] PHA02517 YkfC RVT-GII GIIM Feature: gene Location: 1-450 bp Ori: KEN80286.1 Feature: domain Description: PHA02517 Location: 31-385 bp Feature: domain Description: PHA0251 7 Location: 31 -385 bp Feature: gene Location: 1042-1188 bp Ori: KEN80287.1 Feature: domain Description: YkfC Location: 1051-1186 bp Feature: domain Description: YkfC Location: 1 051 -1 1 86 bp Feature: gene Location: 1718-2551 bp Ori: KEN80288.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1724-2033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 724-2033 bp Feature: domain Description: GIIM Note: maturase Location: 2108-2327 bp Feature: domain Description: GIIM Note: maturase Location: 21 08-2327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: JOSH01000064.1 (43292 bp)
Overview 1 RT 1: 39255-43292 bp Neighborhood of RT #1 [39255, 43292] Tra5 PRK15185 RVT-GII GIIM PRK09413 Feature: gene Location: 39255-39449 bp Ori: KEN81441.1 Feature: domain Description: Tra5 Location: 39300-39447 bp Feature: domain Description: Tra5 Location: 39300-39447 bp Feature: gene Location: 39869-40660 bp Ori: KEN81442.1 Feature: domain Description: PRK15185 Location: 40265-40637 bp Feature: domain Description: PRK15185 Location: 402 65-40637 bp Feature: gene Location: 41218-42606 bp Ori: KEN81443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41548-42166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41548-42 166 bp Feature: domain Description: GIIM Note: maturase Location: 42214-42445 bp Feature: domain Description: GIIM Note: maturase Location: 42 2 14-42 445 bp Feature: gene Location: 43166-43292 bp Ori: KEN81444.1 Feature: domain Description: PRK09413 Location: 43169-43292 bp Feature: domain Description: PRK09413 Location: 43169-432 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), PRK15185 (transcriptional regulator HilD; Provisional), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: JOSH01000198.1 (10839 bp)
Overview 1 RT 1: 534-3442 bp Neighborhood of RT #1 [534, 3444] RVT-GII GIIM fecE Feature: gene Location: 534-1367 bp Ori: KEN71328.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540-849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540-849 bp Feature: domain Description: GIIM Note: maturase Location: 924-1143 bp Feature: domain Description: GIIM Note: maturase Location: 924-1143 bp Feature: gene Location: 2132-2275 bp Feature: gene Location: 2833-3444 bp Ori: KEN71330.1 Feature: domain Description: fecE Location: 2836-3442 bp Feature: domain Description: fecE Location: 283 6-3 442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), fecE (PRK11231)

Seq: JOSH01000110.1 (8391 bp)
Overview 1 RT 1: 4843-7634 bp Neighborhood of RT #1 [4843, 7858] AAA_15 TOPRIM_OLD PHA02517 RVT-GII GIIM Feature: gene Location: 4843-6291 bp Ori: KEN80764.1 Feature: domain Description: AAA_15 Location: 5428-5563 bp Feature: domain Description: AAA_15 Location: 54 28-5563 bp Feature: domain Description: TOPRIM_OLD Location: 5728-5980 bp Feature: domain Description: TOPRIM_OLD Location: 5728-5980 bp Feature: gene Location: 6462-6833 bp Ori: KEN80765.1 Feature: domain Description: PHA02517 Location: 6465-6831 bp Feature: domain Description: PHA02517 Location: 64 65-6831 bp Feature: gene Location: 7025-7858 bp Ori: KEN80766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7031-7340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7031-734 0 bp Feature: domain Description: GIIM Note: maturase Location: 7415-7634 bp Feature: domain Description: GIIM Note: maturase Location: 74 15-7634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)