myRT

myRT report for GCA_000713825.1_ASM71382v1

Download annotations/find similar RTs

Seq: JOSS01000071.1 (191391 bp)
Overview 1 RT 1: 69-6635 bp Neighborhood of RT #1 [69, 6637] RVT-GII GIIM PAAR_2 RhsA RhsA RhsA PRK09687 Feature: gene Location: 69-839 bp Ori: KEO26192.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-399 bp Feature: domain Description: GIIM Note: maturase Location: 447-678 bp Feature: domain Description: GIIM Note: maturase Location: 447-678 bp Feature: gene Location: 1100-5335 bp Ori: KEO26193.1 Feature: domain Description: PAAR_2 Location: 1106-1187 bp Feature: domain Description: PAAR_2 Location: 1 1 06-1 1 87 bp Feature: domain Description: RhsA Location: 2090-2249 bp Feature: domain Description: RhsA Location: 2090-2249 bp Feature: domain Description: RhsA Location: 2303-2642 bp Feature: domain Description: RhsA Location: 2303-2642 bp Feature: domain Description: RhsA Location: 2705-5204 bp Feature: domain Description: RhsA Location: 2705-5204 bp Feature: gene Location: 5795-6637 bp Ori: KEO26194.1 Gene: yibA Feature: domain Description: PRK09687 Location: 5798-6635 bp Feature: domain Description: PRK09687 Location: 5798-6635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_2 (cd14738), RhsA (COG3209), PRK09687 (putative lyase; Provisional)

Seq: JOSS01000076.1 (50178 bp)
Overview 1 RT 1: 69-5780 bp Neighborhood of RT #1 [69, 5893] RVT-GII GIIM PAAR_2 RhsA RhsA RhsA DDE_Tnp_IS1 Feature: gene Location: 69-839 bp Ori: KEO25506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 -399 bp Feature: domain Description: GIIM Note: maturase Location: 447-678 bp Feature: domain Description: GIIM Note: maturase Location: 447-678 bp Feature: gene Location: 1100-5284 bp Ori: KEO25507.1 Feature: domain Description: PAAR_2 Location: 1106-1187 bp Feature: domain Description: PAAR_2 Location: 1106-1187 bp Feature: domain Description: RhsA Location: 2090-2249 bp Feature: domain Description: RhsA Location: 2 090-2 2 49 bp Feature: domain Description: RhsA Location: 2303-2642 bp Feature: domain Description: RhsA Location: 2 303-2 642 bp Feature: domain Description: RhsA Location: 2705-5195 bp Feature: domain Description: RhsA Location: 2 705-5195 bp Feature: gene Location: 5579-5893 bp Ori: KEO25508.1 Feature: domain Description: DDE_Tnp_IS1 Location: 5582-5780 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5582 -5780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_2 (cd14738), RhsA (COG3209), DDE_Tnp_IS1 (pfam03400)

Seq: JOSS01000014.1 (34143 bp)
Overview 1 RT 1: 31154-34142 bp Neighborhood of RT #1 [31154, 34143] DUF2517 RVT-GII GIIM PRK09413 Feature: gene Location: 31154-31360 bp Ori: KEO33724.1 Feature: domain Description: DUF2517 Location: 31166-31343 bp Feature: domain Description: DUF2517 Location: 3 1166-3 13 43 bp Feature: gene Location: 31361-31489 bp Feature: gene Location: 31873-33261 bp Ori: KEO33726.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32203-32821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2203 -3 2821 bp Feature: domain Description: GIIM Note: maturase Location: 32869-33100 bp Feature: domain Description: GIIM Note: maturase Location: 3 2869-3 3 100 bp Feature: gene Location: 33821-34143 bp Ori: KEO33727.1 Feature: domain Description: PRK09413 Location: 33824-34142 bp Feature: domain Description: PRK09413 Location: 3 3 824-3 4142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2517 (pfam10725), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: JOSS01000163.1 (16270 bp)
Overview 1 RT 1: 14845-16131 bp Neighborhood of RT #1 [14845, 16270] YkfC RVT-GII Feature: gene Location: 14845-14958 bp Feature: gene Location: 15140-15286 bp Ori: KEO20738.1 Feature: domain Description: YkfC Location: 15149-15284 bp Feature: domain Description: YkfC Location: 1514 9-15284 bp Feature: gene Location: 15816-16270 bp Ori: KEO20739.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15822-16131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15822-16131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII

Seq: JOSS01000112.1 (2172 bp)
Overview 1 RT 1: 93-1897 bp Neighborhood of RT #1 [93, 1897] RVT-GII GIIM YkfC Feature: gene Location: 93-926 bp Ori: KEO23185.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-408 bp Feature: domain Description: GIIM Note: maturase Location: 483-702 bp Feature: domain Description: GIIM Note: maturase Location: 483-702 bp Feature: gene Location: 1456-1602 bp Ori: KEO23186.1 Feature: domain Description: YkfC Location: 1465-1600 bp Feature: domain Description: YkfC Location: 1465 -1600 bp Feature: gene Location: 1784-1897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YkfC (COG3344)

Seq: JOSS01000015.1 (8944 bp)
Overview 1 RT 1: 69-7018 bp Neighborhood of RT #1 [69, 7170] RVT-GII GIIM PAAR_2 RhsA RhsA RhsA RhsA Feature: gene Location: 69-839 bp Ori: KEO33676.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-399 bp Feature: domain Description: GIIM Note: maturase Location: 447-678 bp Feature: domain Description: GIIM Note: maturase Location: 447-6 78 bp Feature: gene Location: 1100-5293 bp Ori: KEO33677.1 Gene: rhsC Feature: domain Description: PAAR_2 Location: 1106-1187 bp Feature: domain Description: PAAR_2 Location: 1106 -1187 bp Feature: domain Description: RhsA Location: 2090-2249 bp Feature: domain Description: RhsA Location: 2090-2249 bp Feature: domain Description: RhsA Location: 2303-2642 bp Feature: domain Description: RhsA Location: 2303-26 42 bp Feature: domain Description: RhsA Location: 2705-4886 bp Feature: domain Description: RhsA Location: 2705-4886 bp Feature: gene Location: 5737-7170 bp Ori: KEO33678.1 Feature: domain Description: RhsA Location: 5740-7018 bp Feature: domain Description: RhsA Location: 5740-7018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_2 (cd14738), RhsA (COG3209)

Seq: JOSS01000185.1 (6986 bp)
Overview 1 RT 1: 1-1431 bp Neighborhood of RT #1 [1, 1431] RVT-GII YkfC Feature: gene Location: 1-460 bp Ori: KEO19984.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 -316 bp Feature: gene Location: 990-1136 bp Ori: KEO19985.1 Feature: domain Description: YkfC Location: 999-1134 bp Feature: domain Description: YkfC Location: 999-1134 bp Feature: gene Location: 1318-1431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344)